SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23950

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23950
AAGATGATGCCAGAAAACCAATTTTGATTATACATCCAGGAAAGATGGACAATGACACTGCAAATGACTTTGTGATACGGATCATTCCAACAGTATTAGCTGGAGTATTTGACATTTCGAAGCTGGCCCCTGGTCGCAATAATGTTCGAGATTTCCAGCAGGGAGGCATGGCACAACCTACACCTGATTACAATACAGTATCTTGGAAGATATGTTCATCGAGGATCATAGTGCATTCCTTAAAAAGAACATTTCTGGATCAAAAACTTTTGTGGAAGCATTATTATTACTTAAA

Ace file of the UniGene biog3_v1.0_unigene23950 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene43259	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleolar RNA-associated protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCN3_CUCME	-	-	9.0e-26	45%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	46%
Blast2go	nucleolar protein 6-like	-	-	7.93357e-31	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nrap protein	IPR005554	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8S471

Fln msg: Separated hits, possible frame ERROR between 194 and 197, Distance to subject end: 771 aas, your sequence is shorter than subject: 98 - 1008

Fln protein: DDARKPILIIHPGKMDNDTANDFVIRIIPTVLAGVFDISKLAPGRNNVRDFQQGGMAQPTPDYxxSILEDMFIEDHSAFLKKNISGSKTFVEALLLLK

Protein Length: 99

Fln nts: AAGATGATGCCAGAAAACCAATTTTGATTATACATCCAGGAAAGATGGACAATGACACTGCAAATGACTTTGTGATACGGATCATTCCAACAGTATTAGCTGGAGTATTTGACATTTCGAAGCTGGCCCCTGGTCGCAATAATGTTCGAGATTTCCAGCAGGGAGGCATGGCACAACCTACACCTGATTACAAxxxCAGTATCTTGGAAGATATGTTCATCGAGGATCATAGTGCATTCCTTAAAAAGAACATTTCTGGATCAAAAACTTTTGTGGAAGCATTATTATTACTTAAA

Fln Alignment:

biogeco3_mira_c23397___DARKPILIIHPGKMDNDTANDFVIRIIPTVLAGVFDISKLAPGRNNVRDFQQGGMAQPTPDYNxSILEDMFIEDHSAFLKKNISGSKTFVEALLLLK
D8S471__________________DARKPVLVLHTA------SGMFDLRVIPTISSNVFDISKLDDGRSNVHNEGTGEPLQATPSYNxSILEDMFVEELSTVEKNLLCHSRRLQEAVMLLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain