SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23885

Length: 319 nt

UniGene Fasta

>biog3_v1.0_unigene23885
AATGTAACAATCCCACTGATACTCTCCTAGTTGGCCAGGAGTTTACTGTGGGACAAACCCTCAGTATGGGTTCTTATTCCTTCTCTTTCGATTCTTTTGGGAATCTTTCTCTCAAATGGCAAAACAACATCACATACTGGAACGTCAGCTTCTCGCAGCCGTCCAACTTACTCAAACTATCACTGAATGATCAGGGGATATTCTCCCTCACCAATTCCAACAGTAAGAGGTTTTGCTATTGGTATTTTGTAACAGTCATTCCCTCTGTTTCTGGCCGGATTCTGTGTATATCCAGGTGTAGCTCTGAAATTTGAATCTT

Ace file of the UniGene biog3_v1.0_unigene23885

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7005	1/2
SustainPine v2.0	sp_v2.0_unigene21781	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T4Z1_RICCO	-	-	47%
FL-Next	sp=G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300; Arabidopsis thaliana (Mouse-ear cress).	-	-	42%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	60%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	60%
Blast2go	plasma membrane	GO:0005886	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XID3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 581 aas, your sequence is shorter than subject: 104 - 829

Fln protein: CNNPTDTLLVGQEFTVGQTLSMGSYSFSFDSFGNLSLKWQNNITYWNVSFSQPSNLLKLSLNDQGIFSLTNSNSKRFCYWYFVTVIPSVSGRILCISRCSSEI*

Protein Length: 105

Fln nts: AATGTAACAATCCCACTGATACTCTCCTAGTTGGCCAGGAGTTTACTGTGGGACAAACCCTCAGTATGGGTTCTTATTCCTTCTCTTTCGATTCTTTTGGGAATCTTTCTCTCAAATGGCAAAACAACATCACATACTGGAACGTCAGCTTCTCGCAGCCGTCCAACTTACTCAAACTATCACTGAATGATCAGGGGATATTCTCCCTCACCAATTCCAACAGTAAGAGGTTTTGCTATTGGTATTTTGTAACAGTCATTCCCTCTGTTTCTGGCCGGATTCTGTGTATATCCAGGTGTAGCTCTGAAATTTGAATCTT

Fln Alignment:

biogeco3_mira_c23303___NNPTDTLLVGQEFTVGQTLSMGSYSFSFDSFGNLSLKWQNNITYW----NVSFSQPSNLLKLSLNDQGIFSLTNSN
Q9XID3__________________DNPTDTIVQSQNFTAGKILRSGLYSFQLERSGNLTLRWNTSAIYWNHGLNSSFSSNLSSPRLSLQTNGVVSIFESN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain