SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23859

Length: 282 nt

UniGene Fasta

>biog3_v1.0_unigene23859
ACCTGAGACAATGATGTAACATTTGCTTACAGCAGCAGATCGATATGGTCTGCGTCAGTTAAGGTGGTTGTGTGAGTCGAGAATATCACAGGGAATAAGTGTGAACACTGTTGCCAAAATACTTGAACTGGCCCAGCGATATCAGGCTTCTCAACTCAAATCTGCATGCCTTAAATTTGCTGCCATTAACTTGGAAGACGTCATGAAGTCAGAGGGATTTGAATACTTGAAGGAGAATTGCCCCTCTCTTCAGTTGGAGCTTCTACAAACTGTTGCACAATT

Ace file of the UniGene biog3_v1.0_unigene23859

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10133	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ and M4 domain-containing protein [Arabidopsis thaliana] sp\|Q9SRV1.1\|BPM4_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 4; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 4; Short=AtBPM4 gb\|AAF00643.1\|AC009540_20 unknown protein [Ara	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	speckle-type poz protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to water deprivation	GO:0042631	Biological Process	77%
Blast2go	cellular response to salt stress	GO:0071472	Biological Process	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	cytosol	GO:0005829	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	MATH	IPR002083	-	-
Sma3	TRAF-type	IPR013322	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMS2

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 93 - 390

Fln protein: PETMM*HLLTAADRYGLRQLRWLCESRISQGISVNTVAKILELAQRYQASQLKSACLKFAAINLEDVMKSEGFEYLKENCPSLQLELLQTVAQ

Protein Length: 94

Fln nts: ACCTGAGACAATGATGTAACATTTGCTTACAGCAGCAGATCGATATGGTCTGCGTCAGTTAAGGTGGTTGTGTGAGTCGAGAATATCACAGGGAATAAGTGTGAACACTGTTGCCAAAATACTTGAACTGGCCCAGCGATATCAGGCTTCTCAACTCAAATCTGCATGCCTTAAATTTGCTGCCATTAACTTGGAAGACGTCATGAAGTCAGAGGGATTTGAATACTTGAAGGAGAATTGCCCCTCTCTTCAGTTGGAGCTTCTACAAACTGTTGCACAATT

Fln Alignment:

biogeco3_mira_c23266___PETMM*HLLTAADRYGLRQLRWLCESRISQGISVNTVAKILELAQRYQASQLKSACLKFAAINLEDVMKSEGFEYLKENCPSLQLELLQTVAQ
B8LMS2__________________PETMIEYLLTAADRYGLRQLRWLCESRISQGITVSTVAKILELAQRYQASQLKSACLKFAASNLEEVMKSEGFEYLKENCPSLQLELLQTVAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain