SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23831

Length: 231 nt

UniGene Fasta

>biog3_v1.0_unigene23831
AATGTATATCTCTTTTAGCTTGCTGTGTTGGCATCGATCCAAAGGCCAATATGGTTTCTGCAAGGCTGACTCGTTCTCTGAGTTCTCGAGAGCGTGTTGAGGACACGCTATCTGAGCACCGCAATCAACTAGTTGCTCTGTTTTCAAGATATGTAGCGCAGGGCAAGAAGGTTTGCAGCCTCATGAAATATTAGATGGTCTAGCAGCAGTAATAGGAGAGAATGATGAACA

Ace file of the UniGene biog3_v1.0_unigene23831

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60691	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	85%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	70%
Blast2go	sucrose synthase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose synthase.	EC:2.4.1.13	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	suspensor development	GO:0010098	Biological Process	87%
Blast2go	sucrose metabolic process	GO:0005985	Biological Process	87%
Blast2go	seed maturation	GO:0010431	Biological Process	87%
Blast2go	starch metabolic process	GO:0005982	Biological Process	87%
Blast2go	sucrose synthase activity	GO:0016157	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Overlapping hits, possible frame ERROR between 173 and 161, Distance to subject end: 772 aas, your sequence is shorter than subject: 60 - 833

Fln protein: MVSARLTRSLSSRERVEDTLSEHRNQLVALFSRYVAxxxxxxQPHEILDGLAAVIGENDE

Protein Length: 61

Fln nts: AATGTATATCTCTTTTAGCTTGCTGTGTTGGCATCGATCCAAAGGCCAAT_-_ATGGTTTCTGCAAGGCTGACTCGTTCTCTGAGTTCTCGAGAGCGTGTTGAGGACACGCTATCTGAGCACCGCAATCAACTAGTTGCTCTGTTTTCAAGATATGTAGCGxxxxxxxxxxxxxxxxxxCAGCCTCATGAAATATTAGATGGTCTAGCAGCAGTAATAGGAGAGAATGATGAACA

Fln Alignment:

biogeco3_mira_c23219___MVSARLTRSLSSRERVEDTLSEHRNQLVALFSRYVAQxxxxLQPHEILDGLAAVIGENDE
A6N837__________________MVAAAITHALSSRERVEDMLSEHRNEIVSLLSRYVAExxxxLQPHQLLDGLEEVIGKNVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain