SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23824

Length: 230 nt

UniGene Fasta

>biog3_v1.0_unigene23824
AATGTCGTGACCATCATTCAAACAGGGACGGGACCTTGTCATTGCAAATGTTGGAGACTCTCTGTCTATTCTGGGAACAATGTCTGCTGATGGAAATTTGACAGCCATTCAGTTGACAGTTGACCTGAAGCCAACCTTACCTGGGGAGGCAGAAAGGATAAAGCAGTGCAAAGGCCGAGTCCATGCTCTAAAAGATGAACCCCATGTGCATAGAGTATGGTTACCGAATG

Ace file of the UniGene biog3_v1.0_unigene23824

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2002	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2c [Medicago truncatula]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	protein phosphatase 2c	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLH8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 241 aas, your sequence is shorter than subject: 76 - 526

Fln protein: MS*PSFKQGRDLVIANVGDSLSILGTMSADGNLTAIQLTVDLKPTLPGEAERIKQCKGRVHALKDEPHVHRVWLPN

Protein Length: 77

Fln nts: AATGTCGTGACCATCATTCAAACAGGGACGGGACCTTGTCATTGCAAATGTTGGAGACTCTCTGTCTATTCTGGGAACAATGTCTGCTGATGGAAATTTGACAGCCATTCAGTTGACAGTTGACCTGAAGCCAACCTTACCTGGGGAGGCAGAAAGGATAAAGCAGTGCAAAGGCCGAGTCCATGCTCTAAAAGATGAACCCCATGTGCATAGAGTATGGTTACCGAATG

Fln Alignment:

biogeco3_mira_c23211___KQGRDLVIANVGDSLSILGTMSADGNLTAIQLTVDLKPTLPGEAERIKQCKGRVHALKDEPHVHRVWLPN
B8LLH8__________________KQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQCKGRVFALHDEPEVSRVWLPH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain