SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23813

Length: 313 nt

UniGene Fasta

>biog3_v1.0_unigene23813
AATGTCATCAGGAGAAAGCAATGGTAGCATAGTCGAAGACCCAAGCAAAGAACCTAATAAGCAGGTATCCTTGGAGGAAACTTGTAAAGACAAAAACGGGGATGAGCTTGAAGGCAAAGAAGTTGAAATTGATGACTGGCTATTTGAATTTGCTCAGTTGTTTCGCACACATGTAGGCATTGATCCAGATGCTCACTTGGATCTGCATGAGCTAGGAATGGAGCTATGCTCTGAGGCATTGGAGGAAACTGTGACCAGTGAAGAAGCCCAGCGCCTTTTTGAGATGGCAGCATGCAAGTTCCAGGAGGTGGCA

Ace file of the UniGene biog3_v1.0_unigene23813

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2717	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	octicosapeptide/Phox/Be.1 domain-containing protein [Arabidopsis thaliana] gb\|AAF70848.1\|AC003113_15 F2401.12 [Arabidopsis thaliana] gb\|AAL87265.1\| unknown protein [Arabidopsis thaliana] gb\|AAM45044.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33961.1\|	-	-	54%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	65%
Blast2go	heat shock protein 70 -interacting	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HZH5

Fln msg: Distance to subject end: 264 aas, your sequence is shorter than subject: 104 - 789

Fln protein: MSSGESNGSIVEDPSKEPNKQVSLEETCKDKNGDELEGKEVEIDDWLFEFAQLFRTHVGIDPDAHLDLHELGMELCSEALEETVTSEEAQRLFEMAACKFQEVA

Protein Length: 105

Fln nts: AATGTCATCAGGAGAAAGCAATGGTAGCATAGTCGAAGACCCAAGCAAAGAACCTAATAAGCAGGTATCCTTGGAGGAAACTTGTAAAGACAAAAACGGGGATGAGCTTGAAGGCAAAGAAGTTGAAATTGATGACTGGCTATTTGAATTTGCTCAGTTGTTTCGCACACATGTAGGCATTGATCCAGATGCTCACTTGGATCTGCATGAGCTAGGAATGGAGCTATGCTCTGAGGCATTGGAGGAAACTGTGACCAGTGAAGAAGCCCAGCGCCTTTTTGAGATGGCAGCATGCAAGTTCCAGGAGGTGGCA

Fln Alignment:

biogeco3_mira_c23195___SSGESNGSIVEDPSKEPNKQVSLEETCKDKNGDELEGKEVEIDDWLFEFAQLFRTHVGIDPDAHLDLHELGMELCSEALEETVTSEEAQRLFEMAACKFQEVA
B9HZH5__________________SLGESVSEVIDTEINKAEKETTKEKL--EASGDP-ESREVEMDDWLFEFAQLFRTHVGIDPDAHIDLHEIGMELCSEALEETVTSEEAQSLFDKAASKFQEVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain