SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23796

Length: 299 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23796
AGATGAATGGCGCATGCAGCAGATTGCAAGTGGTGAAGCGCAGGATAATGCAAATTTCCAGCCTCTTGGAGGTGATTGGAGAGACAGGGTGAAACGGAAGAAAACTGGATCTATTATGGAGGAAGCAAAACCTCAGGCAAAAACAGCAGACAATTCGGGATCGAAGGGATTCGGTGAAAAGAAGCCAGACTTAGTGGAGCTTTCTAAAGGTCTTCCTACAGGATGGCAGGCATTTTGGGATGACACTTCAGGTGAGGTCTATTATGGTAATTTGACAACCTCAGAAACTACATGACATT

Ace file of the UniGene biog3_v1.0_unigene23796 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2022	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WW domain-containing protein [Arabidopsis thaliana] gb\|AEE75317.1\| WW domain-containing protein [Arabidopsis thaliana]	-	-	9.94922e-44	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	ww domain-containing protein	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8B3

Fln msg: your sequence is shorter than subject: 98 - 287

Fln protein: DEWRMQQIASGEAQDNANFQPLGGDWRDRVKRKKTGSIMEEAKPQAKTADNSGSKGFGEKKPDLVELSKGLPTGWQAFWDDTSGEVYYGNLTTSETT*

Protein Length: 99

Fln nts: AGATGAATGGCGCATGCAGCAGATTGCAAGTGGTGAAGCGCAGGATAATGCAAATTTCCAGCCTCTTGGAGGTGATTGGAGAGACAGGGTGAAACGGAAGAAAACTGGATCTATTATGGAGGAAGCAAAACCTCAGGCAAAAACAGCAGACAATTCGGGATCGAAGGGATTCGGTGAAAAGAAGCCAGACTTAGTGGAGCTTTCTAAAGGTCTTCCTACAGGATGGCAGGCATTTTGGGATGACACTTCAGGTGAGGTCTATTATGGTAATTTGACAACCTCAGAAACTACATGA___CATT

Fln Alignment:

biogeco3_mira_c23170___DEWRMQQIASGEAQDNANFQPLGGDWRDRVKRKKTGSIMEEAKPQAKTADNSGSKGFGEKKPDLVELSKGLPTGWQAFWDDTSGEVYYGNLTTSETT
D5A8B3__________________EEWRMQQIASGEAQDNANFQPLGGDWRERVKRKKTGSAVEETKPQATTVDNSGSKGLDKKKPDLVELSKGLPMGWQAFWDESSGEVYYGNLTTSETT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain