SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23789

Length: 234 nt

UniGene Fasta

>biog3_v1.0_unigene23789
AATGTTTCTGAGAGTGGTAAACGTGCACGACAGCGTGCCGAAGGTCCCCGGGATTCTGTTCAATGAAAAATTCAAGATTATGAAGCAGTTGATCGACAGGCTTCCGTGGAGTTACAGTCATGTAGGTGTGGAGCTGGCTCTTGATCACACACATTCTCCGTTCCTGAAGCCCACTAACGATCTGTCCTGCTTTCATAATCTGGAGCCCTTCTGCACCTCCTGGACGGATACCAT

Ace file of the UniGene biog3_v1.0_unigene23789

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21629	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG3675 Predicted lipase	-	-	1.0e-07	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	lipase class 3 family protein	-	-	0.0	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipase A(1).	EC:3.1.1.32	-	0.0	74%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerophospholipid metabolism	00564		74%
Blast2go	alpha-Linolenic acid metabolism	00592		74%
Blast2go	Metabolic pathways	01100		74%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	74%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		74%
Blast2go	Metabolic pathways	01100		74%
Blast2go	Galactolipase.	EC:3.1.1.26	-	74%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylcholine 1-acylhydrolase activity	GO:0008970	Molecular Function	74%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	74%
Blast2go	galactolipase activity	GO:0047714	Molecular Function	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKE3

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 77 - 554

Fln protein: MFLRVVNVHDSVPKVPGILFNEKFKIMKQLIDRLPWSYSHVGVELALDHTHSPFLKPTNDLSCFHNLEPFCTSWTDT

Protein Length: 78

Fln nts: AATGTTTCTGAGAGTGGTAAACGTGCACGACAGCGTGCCGAAGGTCCCCGGGATTCTGTTCAATGAAAAATTCAAGATTATGAAGCAGTTGATCGACAGGCTTCCGTGGAGTTACAGTCATGTAGGTGTGGAGCTGGCTCTTGATCACACACATTCTCCGTTCCTGAAGCCCACTAACGATCTGTCCTGCTTTCATAATCTGGAGCCCTTCTGCACCTCCTGGACGGATACCAT

Fln Alignment:

biogeco3_mira_c23158___FLRVVNVHDSVPKVPGILFNEKFKIMKQLIDRLPWSYSHVGVELALDHTHSPFLKPTNDLSCFHNLE
B8LKE3__________________FLRVVNVHDIVPKVPGILFNETFKMMKQWIDKLPWSYCHVGVKLVLDHTQSPFLKPTNDSSCFHNLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain