SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23775

Length: 423 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23775
GGCACTATTTTCTGGTGCTCCTCTTACCCAATCTTTGTGTGTAGAATTGGATTCGAAATGGGATCGGCTTCCGAAAGCTCAGAGATGAATGCGAAGATTGTGAATGAAGATGAATGGCTTCTGGGCATGGAACTCGGGAATTTCTCCTGCCTTCCTATGGCTATGAAGGCAGCCATTGAGCTCGATGTCCTCCAAATCATAGCAAATGCCGGCAATGGCGTCCAGCTCTCGCCCAGACAAATCGTTGCCCACATTCCAACCACGAACCCCGACGCTGCCATTACACTTGATCGGATCCTCAGAGCGTTAGCCAGCCATTCGGTTCTGAGCTGCTCTGTGACCACGGACGAGAATGGCAAGGCCGAGAGGCTCTATGGCCTCACTCCTCTCTGCAAATATCTGGTCAAGAACCAGGATGACATT

Ace file of the UniGene biog3_v1.0_unigene23775 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15352	1/4
SustainPine v2.0	sp_v2.0_unigene24807	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeate O-methyltransferase n=4 Tax=Picea RepID=Q5NDD5_PICAB	-	-	95%
FL-Next	tr=Caffeate O-methyltransferase; Picea abies (Norway spruce) (Picea excelsa).	-	-	95%
Blast2go	caffeic acid 3-o-methyltransferase	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5NDD5

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 122 - 364

Fln protein: MGSASESSEMNAKIVNEDEWLLGMELGNFSCLPMAMKAAIELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAITLDRILRALASHSVLSCSVTTDENGKAERLYGLTPLCKYLVKNQDDI

Protein Length: 123

Fln nts: GGCACTATTTTCTGGTGCTCCTCTTACCCAATCTTTGTGTGTAGAATTGGATTCGAA_-_ATGGGATCGGCTTCCGAAAGCTCAGAGATGAATGCGAAGATTGTGAATGAAGATGAATGGCTTCTGGGCATGGAACTCGGGAATTTCTCCTGCCTTCCTATGGCTATGAAGGCAGCCATTGAGCTCGATGTCCTCCAAATCATAGCAAATGCCGGCAATGGCGTCCAGCTCTCGCCCAGACAAATCGTTGCCCACATTCCAACCACGAACCCCGACGCTGCCATTACACTTGATCGGATCCTCAGAGCGTTAGCCAGCCATTCGGTTCTGAGCTGCTCTGTGACCACGGACGAGAATGGCAAGGCCGAGAGGCTCTATGGCCTCACTCCTCTCTGCAAATATCTGGTCAAGAACCAGGATGACATT

Fln Alignment:

biogeco3_mira_c23138___MGSASESSEMNAKIVNEDEWLLGMELGNFSCLPMAMKAAIELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAITLDRILRALASHSVLSCSVTTDENGKAERLYGLTPLCKYLVKNQDDI
Q5NDD5__________________MGSASENSEMNTKIVNEDEWLLGMELGNFSCLPMGMKAAIELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAITLDRILRVLASHSVLSCSVTTDENGKAERLYGLTPLCKYLVKNQDGV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
188		75	25		0.996473
244		75		25	0.996473
247	75		25		0.996473
262	75	25			0.996473
268	75		25		0.996473
277			75	25	0.996473
286		75		25	0.996473
292		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain