SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23773

Length: 376 nt

UniGene Fasta

>biog3_v1.0_unigene23773
AATGTACTTCCTGTTTGGCTGCGCCCAATTGTTTACAGAAGCTGGGCTCGGGCTTTTCATTCAAATATTAATGAAGCAGCTCAGCCCTTGGAGGAATATACTTCTCTTCGTGAGTTCTTTGTTCGTGTACTGAAAGAAGGCTCCAGGCCTGTTGATCAGGACCCAAAATGTCTGGTTAGTCCTGTTGATGGAATTATACTGAGGGTTGGACAACTGAAAGGGCCTGGAGCTATGATAGAACAAGTGAAAGGATTTTCATATTCTGCTGTTTCACTGCTTGGTTCAAGTTCTGCACTTCCAATCTCAGATTCGCAAGAGGTATTGGCCGAGCAATATGAGCAGAAACAAGTCAGAAGAAACTTGAATCAGAGGTCAT

Ace file of the UniGene biog3_v1.0_unigene23773

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene40494	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	phosphatidylserine decarboxylase [Solanum lycopersicum]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	phosphatidylserine decarboxylase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphatidylserine decarboxylase.	EC:4.1.1.65	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	77%
Blast2go	Metabolic pathways	01100		0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphatidylserine decarboxylase activity	GO:0004609	Molecular Function	0.0	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidylserine decarboxylase-related	IPR003817	-	0.0	-
Sma3	Phosphatidylserine decarboxylase	IPR005221	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWL6

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 125 - 458

Fln protein: NVLPVWLRPIVYRSWARAFHSNINEAAQPLEEYTSLREFFVRVLKEGSRPVDQDPKCLVSPVDGIILRVGQLKGPGAMIEQVKGFSYSAVSLLGSSSALPISDSQEVLAEQYEQKQVRRNLNQRS

Protein Length: 126

Fln nts: AATGTACTTCCTGTTTGGCTGCGCCCAATTGTTTACAGAAGCTGGGCTCGGGCTTTTCATTCAAATATTAATGAAGCAGCTCAGCCCTTGGAGGAATATACTTCTCTTCGTGAGTTCTTTGTTCGTGTACTGAAAGAAGGCTCCAGGCCTGTTGATCAGGACCCAAAATGTCTGGTTAGTCCTGTTGATGGAATTATACTGAGGGTTGGACAACTGAAAGGGCCTGGAGCTATGATAGAACAAGTGAAAGGATTTTCATATTCTGCTGTTTCACTGCTTGGTTCAAGTTCTGCACTTCCAATCTCAGATTCGCAAGAGGTATTGGCCGAGCAATATGAGCAGAAACAAGTCAGAAGAAACTTGAATCAGAGGTCAT

Fln Alignment:

biogeco3_mira_c23133___LPVWLRPIVYRSWARAFHSNINEAAQPLEEYTSLREFFVRVLKEGSRPVDQDPKCLVSPVDGIILRVGQLKGPGAMIEQVKGFXXXXXXXXXXXXXXPISDSQEVLAEQYEQKQVRRNLNQRS
A9NWL6__________________LPVWLRPFIYRSWARAFHSNISEAAQPLEEYASLREFFVRTLKEGSRPLDQDPKCLVSPVDGIILRVGQLKGPGAMIEQVKGFSYSALSLLGSRSVLPISDSQEVLAEQYEQKQVRRNLNQRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain