SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23769

Length: 457 nt

UniGene Fasta

>biog3_v1.0_unigene23769
AATGTTTTTGGAGTCTCATGGAATATTTTGGCTAATGCATGAGGCGGGTGTTGAAAAGAATGTTGAGACATTCAATGGTTTGATTGAAGCATACGGCAGGGCTGGTGATTTTGTCGAGGCTTTGAAGATATTTAGAGATATGAAGCTAGCAAAATGTCCTCCAAATGAGCAAACTCACGAGGCAGTCTTGAATGTTTATTGCATAGCAGGTCGGATAGATGAAGGCAGCGCATATTTTTTGGAAATCAAAGAACAGGGACTGGTGCCCAGTATCACAGCGTATTGTCTAATGCTCTCTATGTATGCAAGGTCGAGTAGCTGGGAAGATGCTTATGAATTACTAGAAGAAATGCAGGCACATAAAATGCCCAATGCTCATAGAGTGATTGGGATAATGATCAACGTGATTATGATGACCTGCCAAACTGGCAGATGGTTGATTATGTATTTGATATTT

Ace file of the UniGene biog3_v1.0_unigene23769

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8550	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	plastid transcriptionally active 2 [Arabidopsis thaliana] sp\|Q9S7Q2.1\|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; AltName: Full=Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor gb\|AAD55291.1\|	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	transcription from plastid promoter	GO:0042793	Biological Process	65%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	65%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	65%
Blast2go	chloroplast	GO:0009507	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXP3

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 152 - 278

Fln protein: MFLESHGIFWLMHEAGVEKNVETFNGLIEAYGRAGDFVEALKIFRDMKLAKCPPNEQTHEAVLNVYCIAGRIDEGSAYFLEIKEQGLVPSITAYCLMLSMYARSSSWEDAYELLEEMQAHKMPNAHRVIGIMINVIMMTCQTGRWLIMYLIF

Protein Length: 153

Fln nts: AATGTTTTTGGAGTCTCATGGAATATTTTGGCTAATGCATGAGGCGGGTGTTGAAAAGAATGTTGAGACATTCAATGGTTTGATTGAAGCATACGGCAGGGCTGGTGATTTTGTCGAGGCTTTGAAGATATTTAGAGATATGAAGCTAGCAAAATGTCCTCCAAATGAGCAAACTCACGAGGCAGTCTTGAATGTTTATTGCATAGCAGGTCGGATAGATGAAGGCAGCGCATATTTTTTGGAAATCAAAGAACAGGGACTGGTGCCCAGTATCACAGCGTATTGTCTAATGCTCTCTATGTATGCAAGGTCGAGTAGCTGGGAAGATGCTTATGAATTACTAGAAGAAATGCAGGCACATAAAATGCCCAATGCTCATAGAGTGATTGGGATAATGATCAACGTGATTATGATGACCTGCCAAACTGGCAGATGGTTGATTATGTATTTGATATTT

Fln Alignment:

biogeco3_mira_c23125___FLESHGIFWLMHEAGVEKNVETFNGLIEAYGRAGDFVEALKIFRDMKLAKCPPNEQTHEAVLNVYCIAGRIDEGSAYFLEIKEQGLVPSITAYCLMLSMYARSSSWEDAYELLEEM
A9NXP3__________________FQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAGLVEDATRLYMEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain