SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23747

Length: 352 nt

UniGene Fasta

>biog3_v1.0_unigene23747
AATGTTATGACCGCATCTTTGTTCCGATTGCAAGAAACTTGACAGGGAATGAACGTGGTATAACATTTCTGCAGAGGATAGGGACTGGCATGGTTATATCCATTCTGTCAATGATTGTTGCTGCGTTGACAGAGATCAGAAGAATCAAGGTAGCAAAAGATAATGGACTCATAGATATGCCCAACGCAACAATTCCATTGAGCATTTTCTGCTGCTTCCACAATATATCTTATTTGGCATAGCTGATGTATTTACAATGGTAGGAATGCAAGAGTACTTTTATGATTAGATGCCGGANACTATGAAAACCCTTGGTATAGCTGTGTATTTGAGTGTTTTAGGAGTTGGTAGT

Ace file of the UniGene biog3_v1.0_unigene23747

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2177	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative peptide/nitrate transporter [Arabidopsis thaliana] sp\|Q0WP01.1\|PTR9_ARATH RecName: Full=Probable peptide/nitrate transporter At1g22540 dbj\|BAF01148.1\| similar to peptide transporter [Arabidopsis thaliana] gb\|ACE79042.1\| At1g22540 [Arabidopsis tha	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	probable peptide nitrate transporter at1g22540-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	71%
Blast2go	transporter activity	GO:0005215	Molecular Function	71%
Blast2go	integral to membrane	GO:0016021	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ03

Fln msg: Separated hits, possible frame ERROR between 206 and 209, Distance to subject end: 77 aas, your sequence is shorter than subject: 117 - 573

Fln protein: CYDRIFVPIARNLTGNERGITFLQRIGTGMVISILSMIVAALTEIRRIKVAKDNGLIDMPNATIPLSxxLLLPQYILFGIADVFTMVGMQEYFYD*MPETMKTLGIAVYLSVLGVGS

Protein Length: 118

Fln nts: AATGTTATGACCGCATCTTTGTTCCGATTGCAAGAAACTTGACAGGGAATGAACGTGGTATAACATTTCTGCAGAGGATAGGGACTGGCATGGTTATATCCATTCTGTCAATGATTGTTGCTGCGTTGACAGAGATCAGAAGAATCAAGGTAGCAAAAGATAATGGACTCATAGATATGCCCAACGCAACAATTCCATTGAGCATxxxTCTGCTGCTTCCACAATATATCTTATTTGGCATAGCTGATGTATTTACAATGGTAGGAATGCAAGAGTACTTTTATGATTAGATGCCGGAaACTATGAAAACCCTTGGTATAGCTGTGTATTTGAGTGTTTTAGGAGTTGGTAGT

Fln Alignment:

biogeco3_mira_c23097___YDRIFVPIARNLTGNERGITFLQRIGTGMVISILSMIVAALTEIRRIKVAKDNGLIDMPNATIPLSIxLLLPQYILFGIADVFTMVGMQEYFYD*MPETMKTLGIAVYLSVLGVGS
B8LQ03__________________YDRIFVPIARNLTGNERGITFLQRIGTGMFISILSMIVAALAEIRRIKAAKDNGLIDMPKATIPLSIxLLLPQYILFGLADVFTMVGMQEYFYDQMPDTMKTLGIAVYLSVLGVGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain