SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23745

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene23745
AATGTTTGCAAATATTTTTAGATATGTTAATCATCCTGAAGCTGTGGCAGATGCATTTCGAAAGATTTGGCCAATTTTGAAAGCGGTTTTTGATCAGCGTGCTTGGGACATGCTGACCATGGAACGACTATGCCGGGCTTGCAAATATGCTGTTAGAACATGTGGGAGATCCATGGGTGTCACAATAGGTGATATGCTACAGGTGGTCCAATTGCAATATCAACATCACCATCAGTCTT

Ace file of the UniGene biog3_v1.0_unigene23745

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27901	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xpo1 domain containing protein	-	-	6.0e-14	23%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	79%
Blast2go	transportin-3-like isoform 1	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9I337

Fln msg: Distance to subject end: 245 aas, your sequence is shorter than subject: 79 - 554

Fln protein: MFANIFRYVNHPEAVADAFRKIWPILKAVFDQRAWDMLTMERLCRACKYAVRTCGRSMGVTIGDMLQVVQLQYQHHHQS

Protein Length: 80

Fln nts: AATGTTTGCAAATATTTTTAGATATGTTAATCATCCTGAAGCTGTGGCAGATGCATTTCGAAAGATTTGGCCAATTTTGAAAGCGGTTTTTGATCAGCGTGCTTGGGACATGCTGACCATGGAACGACTATGCCGGGCTTGCAAATATGCTGTTAGAACATGTGGGAGATCCATGGGTGTCACAATAGGTGATATGCTACAGGTGGTCCAATTGCAATATCAACATCACCATCAGTCTT

Fln Alignment:

biogeco3_mira_c23095___ANIFRYVNHPEAVADAFRKIWPILKAVFDQRAWDMLTMERLCRACKYAVRTCGRSMGVTIGDM
B9I337__________________AYIFRYVNHPEAVADAIQRLWPILKAIFDIRAWDMRTMESLCRACKYAVRTSGRLMGITIGAM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain