SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23735

Length: 237 nt

UniGene Fasta

>biog3_v1.0_unigene23735
AATGTCACAAGAAGGAACAGGAAATAACAGTTCGGAGGATTCAGTGAGCCCAGCCATGGAGGTTAAAGAAATAGCAACCAAAACACAGATTGGAAATCGCCCATATCAAATACCTGCATGGAGTGAACCTCCTGGTCAGCCTTATTACCTTGAAGTTCTCAAGGATGGAGCCATTATCGATACGCTCAACGTTTCTGAAAAAGGTTCATATATGTTTGGACGCCATCATCTATGTGA

Ace file of the UniGene biog3_v1.0_unigene23735

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11214	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	SMAD/FHA domain-containing protein [Arabidopsis thaliana] dbj\|BAE98604.1\| kanadaptin - like protein [Arabidopsis thaliana] gb\|AED94365.1\| SMAD/FHA domain-containing protein [Arabidopsis thaliana]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	58%
Blast2go	adaptor protein kanadaptin	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	66%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AW23

Fln msg: Distance to subject end: 636 aas, your sequence is shorter than subject: 78 - 854

Fln protein: MSQEGTGNNSSEDSVSPAMEVKEIATKTQIGNRPYQIPAWSEPPGQPYYLEVLKDGAIIDTLNVSEKGSYMFGRHHLC

Protein Length: 79

Fln nts: AATGTCACAAGAAGGAACAGGAAATAACAGTTCGGAGGATTCAGTGAGCCCAGCCATGGAGGTTAAAGAAATAGCAACCAAAACACAGATTGGAAATCGCCCATATCAAATACCTGCATGGAGTGAACCTCCTGGTCAGCCTTATTACCTTGAAGTTCTCAAGGATGGAGCCATTATCGATACGCTCAACGTTTCTGAAAAAGGTTCATATATGTTTGGACGCCATCATCTATGTGA

Fln Alignment:

biogeco3_mira_c23082___SSEDSVSPAMEVKEIAT---KTQIGNRPYQIPAWSEPPGQPYYLEVLKDGAIIDTLNVSEKGSYMFGRHHLC
A5AW23__________________STEASESSAMQPSNNSTHHQKTQSAAVPYTIPSWSEPPGHSFYLEVLKDGSIIDQLDVYEKGAYMFGRVDIC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain