SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23716

Length: 241 nt

UniGene Fasta

>biog3_v1.0_unigene23716
AATGTAACATGGGGGTTCATTCTCGATGAACTTAAATGACTCTGTTACTCACAGTGTTGCAGCTGATAAAAGAGGAATCAAGTACCAAGCTGCTGTTAAGCATGGAGATGTCATTCATTACTCTTGGGTGATAGATTGCTGTAAAGAAAAGGCCCTCTTGCCATTACGACCAAAGTACTTTCTTAGCCTTTCAGAGTTATCCAAGGAGAAGATGAAAGAGGATATTGATGCGTTGGGGATC

Ace file of the UniGene biog3_v1.0_unigene23716

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene43074	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA ligase n=1 Tax=Populus trichocarpa RepID=B9IN68_POPTR	-	-	7.0e-26	55%
FL-Next	sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	dna ligase	-	-	5.58879e-30	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA ligase (ATP).	EC:6.5.1.1	-	5.58879e-30	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	double-strand break repair	GO:0006302	Biological Process	5.58879e-30	67%
Blast2go	DNA integration	GO:0015074	Biological Process	5.58879e-30	67%
Blast2go	response to X-ray	GO:0010165	Biological Process	5.58879e-30	67%
Blast2go	telomere maintenance	GO:0000723	Biological Process	5.58879e-30	67%
Blast2go	protein binding	GO:0005515	Molecular Function	5.58879e-30	67%
Blast2go	DNA ligase (ATP) activity	GO:0003910	Molecular Function	5.58879e-30	67%

Source	InterPros	Term	Type	Identity
Sma3	DNA ligase, ATP-dependent	IPR000977	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	DNA ligase, ATP-dependent, N-terminal	IPR012308	-	-
Sma3	DNA ligase, ATP-dependent, C-terminal	IPR012309	-	-
Sma3	DNA ligase, ATP-dependent, central	IPR012310	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LL84

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 460 aas, your sequence is shorter than subject: 80 - 1219

Fln protein: M*HGGSFSMNLNDSVTHSVAADKRGIKYQAAVKHGDVIHYSWVIDCCKEKALLPLRPKYFLSLSELSKEKMKEDIDALGI

Protein Length: 81

Fln nts: AATGTAACATGGGGGTTCATTCTCGATGAACTTAAATGACTCTGTTACTCACAGTGTTGCAGCTGATAAAAGAGGAATCAAGTACCAAGCTGCTGTTAAGCATGGAGATGTCATTCATTACTCTTGGGTGATAGATTGCTGTAAAGAAAAGGCCCTCTTGCCATTACGACCAAAGTACTTTCTTAGCCTTTCAGAGTTATCCAAGGAGAAGATGAAAGAGGATATTGATGCGTTGGGGATC

Fln Alignment:

biogeco3_mira_c23057___HGGSFSMNLNDSVTHSVAADKRGIKYQAAVKHGDVIHYSWVIDCCKEKALLPLRPKYFLSLSELSKEKMKEDID
Q9LL84__________________NGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFSWVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain