SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23713

Length: 330 nt

UniGene Fasta

>biog3_v1.0_unigene23713
CGACATAATCAATCGAGCACAGCAAGCTTTGCTGTTCTTTCTTTGGTGGGTTGATACGAAGATTAATTCATTTCATATTATTCAGAATCAATCATGGCCAAAACTTTTCCTCTTGCCTTGCTCTTTCACCAATTTGCTCTCCACAGGCGTATTTCTTCGTATTATCATTGTTATTATCCTATGGGTATTCTCAAGCTGCTTTGGTTCCAAATTTTTATGCCAATTCATGCCCCAAGGCCGAGGAAATAGTGAAATCAGTAGTAGAAAATGCCGTGATGAAGGAAGCTCGAATGGCAGCGTCCTTAATCAGGCTTCAATTCCATGATTGCT

Ace file of the UniGene biog3_v1.0_unigene23713

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5099	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase 72, putative n=1 Tax=Ricinus communis RepID=B9S693_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	peroxidase 72	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	80%
Blast2go	Methane metabolism	00680	80%
Blast2go	Phenylpropanoid biosynthesis	00940	80%
Blast2go	Biosynthesis of phenylpropanoids	01061	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	80%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	heme binding	GO:0020037	Molecular Function	80%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPA0

Fln msg: Distance to subject end: 260 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 107 - 344

Fln protein: SIEHSKLCCSFFGGLIRRLIHFILFRINHGQNFSSCLALSPICSPQAYFFVLSLLLSYGYSQAALVPNFYANSCPKAEEIVKSVVENAVMKEARMAASLIRLQFHDC

Protein Length: 108

Fln nts: CGACATAATCAATCGAGCACAGCAAGCTTTGCTGTTCTTTCTTTGGTGGGTTGATACGAAGATTAATTCATTTCATATTATTCAGAATCAATCATGGCCAAAACTTTTCCTCTTGCCTTGCTCTTTCACCAATTTGCTCTCCACAGGCGTATTTCTTCGTATTATCATTGTTATTATCCTATGGGTATTCTCAAGCTGCTTTGGTTCCAAATTTTTATGCCAATTCATGCCCCAAGGCCGAGGAAATAGTGAAATCAGTAGTAGAAAATGCCGTGATGAAGGAAGCTCGAATGGCAGCGTCCTTAATCAGGCTTCAATTCCATGATTGCT

Fln Alignment:

biogeco3_mira_c23050___LSPICSPQAYFFVLSL---LLSYG-YSQAALVPNFYANSCPKAEEIVKSVVENAVMKEARMAASLIRLQFHDC
B8LPA0__________________LQLVCSLQAFFISFSFGHPLPHPGHYPVSSLIPHYYAKSCPRAEQIVASVVQKAVMKETRMAASLLRLHFHDC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain