SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23610

Length: 255 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23610
AACATATGCTCTAGAGGTCCAAGCTCACGGCACGGCCACCTGAGAACTCAGCCTCCTCCTCTGCATGTATCGAGAGTCAGAAGGCTTCCTGAGAAAGATCCTCCTGGTTGGGGTTCCAATGTGCCGAATTTAGATGAATGGGATGCCTTGGAAAAGGAAAGTAATGGTGCTGCTAATGCAAAAGGTTTAAACACAAAGTCACATATTCTCGGGTCGAAAACCTTGACATTAGGTGCCTCCCATTCTGGTCACATT

Ace file of the UniGene biog3_v1.0_unigene23610 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11402	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein NOB1 [Arabidopsis thaliana] dbj\|BAB09721.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED94652.1\| RNA-binding protein NOB1 [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=RNA-binding protein nob1, putative; Ricinus communis (Castor bean).	-	-	56%
Blast2go	rna-binding protein nob1	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide binding protein, PINc	IPR006596	-	-
Sma3	Nin one binding (NOB1) Zn-ribbon-like	IPR014881	-	-
Sma3	D-site 20S pre-rRNA nuclease	IPR017117	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RC94

Fln msg: Distance to subject end: 411 aas, your sequence is shorter than subject: 85 - 628

Fln protein: NICSRGPSSRHGHLRTQPPPLHVSRVRRLPEKDPPGWGSNVPNLDEWDALEKESNGAANAKGLNTKSHILGSKTLTLGASHSGHI

Protein Length: 86

Fln nts: AACATATGCTCTAGAGGTCCAAGCTCACGGCACGGCCACCTGAGAACTCAGCCTCCTCCTCTGCATGTATCGAGAGTCAGAAGGCTTCCTGAGAAAGATCCTCCTGGTTGGGGTTCCAATGTGCCGAATTTAGATGAATGGGATGCCTTGGAAAAGGAAAGTAATGGTGCTGCTAATGCAAAAGGTTTAAACACAAAGTCACATATTCTCGGGTCGAAAACCTTGACATTAGGTGCCTCCCATTCTGGTCACATT

Fln Alignment:

biogeco3_mira_c22901___HG--HLRTQPPPLHVSRVRRLPEKDPPGWGSNVPNLDEWDALEKESNGAANAKGLNTKSHILGSKTLTL
B9RC94__________________HGTKHIRDAPPPIHTVNVKRLPEKDMPGWGSNVPNLEEWEALEQEA-----GDGLNAGSRILPLKEMSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain