SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23604

Length: 217 nt

UniGene Fasta

>biog3_v1.0_unigene23604
GAATGAAGGAGATAAGATAGAAGCCGGTGATGTGATCTGTGTCATAGAGACTGACAAAGCAACTCTTGATTTTGAGTCAATGGAAGAGGGGTATTTGGCTAAGATATTAGTACCTGCTGGCTCAAAAGACGTACTTGTTGGTGAACCTCTTGCCATAACTGTAGAGAATCCAGATGATATTCCAAAATTTACAAATATCTTAGCTGATGATTACATT

Ace file of the UniGene biog3_v1.0_unigene23604

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37380	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dihydrolipoamide acetyltransferase [Lithospermum erythrorhizon]	-	-	4.0e-30	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase mitochondrial-like	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	transferase activity	GO:0016740	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	E3 binding	IPR004167	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Dihydrolipoamide acetyltransferase, long form	IPR006257	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPX9

Fln msg: Distance to subject end: 343 aas, your sequence is shorter than subject: 72 - 529

Fln protein: NEGDKIEAGDVICVIETDKATLDFESMEEGYLAKILVPAGSKDVLVGEPLAITVENPDDIPKFTNILADDYI

Protein Length: 73

Fln nts: GAATGAAGGAGATAAGATAGAAGCCGGTGATGTGATCTGTGTCATAGAGACTGACAAAGCAACTCTTGATTTTGAGTCAATGGAAGAGGGGTATTTGGCTAAGATATTAGTACCTGCTGGCTCAAAAGACGTACTTGTTGGTGAACCTCTTGCCATAACTGTAGAGAATCCAGATGATATTCCAAAATTTACAAATATCTTAGCTGATGATTACATT

Fln Alignment:

biogeco3_mira_c22889___NEGDKIEAGDVICVIETDKATLDFESMEEGYLAKILVPAGSKDVLVGEPLAITVENPDDIPKFTNILADDY
B8LPX9__________________NEGDKIEAGDVICDIETDKATLDFESMEEGYLAKILVPAGSKDIPVGQPLAITVENPDDIPKFTNILADEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain