SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23576

Length: 372 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23576
ATTGAAAGAGATAAAATCAAAGCTGAGATGATATTGCCAAGGTCGAATATAGTGGTAGGTCCTTACGCAGGGGATGCCAAGATTAAGCAGGTGGAGTTCGTGAAAAGCAGCGGCAGGGCCAAAGACTGCCCTAAGGATGGCTTGCCTGAGATAGCCATGATGGGCCGCTCCAATGTTGGCAAGTCTTCTCTCATCAATTCACTGGTCAGGAAGAAAGACATCGCCATGACTTCCAAGACACCAGGGAAGACACAACTTATCAACCATTTTTGATAAATAAGAGCTGGTACATAGTAGACTTGCCAGGCTACGGGTATGCAAATGCTCCTGACTCTGCCCGAACTGATTGGACCACATTCACAAAAGGACATT

Ace file of the UniGene biog3_v1.0_unigene23576 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene473	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein engB, putative n=1 Tax=Ricinus communis RepID=B9SH28_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	gtp-binding protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	barrier septum assembly	GO:0000917	Biological Process	77%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	77%
Blast2go	GTP binding	GO:0005525	Molecular Function	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR005289	-	0.0	-
Sma3		IPR002917	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMW0

Fln msg: Overlapping hits, possible frame ERROR between 270 and 267, Distance to subject end: 106 aas, your sequence is shorter than subject: 124 - 317

Fln protein: IERDKIKAEMILPRSNIVVGPYAGDAKIKQVEFVKSSGRAKDCPKDGLPEIAMMGRSNVGKSSLINSLVRKKDIAMTSKTPGKTQLINxxxINKSWYIVDLPGYGYANAPDSARTDWTTFTKGH

Protein Length: 125

Fln nts: ATTGAAAGAGATAAAATCAAAGCTGAGATGATATTGCCAAGGTCGAATATAGTGGTAGGTCCTTACGCAGGGGATGCCAAGATTAAGCAGGTGGAGTTCGTGAAAAGCAGCGGCAGGGCCAAAGACTGCCCTAAGGATGGCTTGCCTGAGATAGCCATGATGGGCCGCTCCAATGTTGGCAAGTCTTCTCTCATCAATTCACTGGTCAGGAAGAAAGACATCGCCATGACTTCCAAGACACCAGGGAAGACACAACTTATCAACxxxxxxxxxATAAATAAGAGCTGGTACATAGTAGACTTGCCAGGCTACGGGTATGCAAATGCTCCTGACTCTGCCCGAACTGATTGGACCACATTCACAAAAGGACATT

Fln Alignment:

biogeco3_mira_c22850___IERDKIKAEMILPRSNIVVGPYAGDAKIKQVEFVKSSGRAKDCPKDGLPEIAMMGRSNVGKSSLINSLVRKKDIAMTSKTPGKTQLINHxLINKSWYIVDLPGYGYANAPDSARTDWTTFTKGH
A9NMW0__________________VERDKIKAEMILPGSNIVVGPYAGDAKIKQVEFVKSSGRAKDCPKNALPEIAMMGRSNVGKSSLINSLVRKKDVAMTSKTPGKTQLINHxLINKSWYIVDLPGYGYANAPDSARTDWSTFTKGY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain