SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23569

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene23569
AATGTATTCAATACCTTCGGAAATGAGAAAACAGCCCACACGCCGAGCTGTGTATGAATATATGAGAGGGAAAGTGCTGGATGTTTTCCCGGAATATTGTAAAGAAGCAGAAGACCACTTATCAAAAGCCGTTAAACTGGATCCTTCTCTGGCGGATGCCTGGCTATGCTTAGGCAATTGCTTCTGGAAGAAGGGTGATTTGAATGGAGCGAAGAACTGCTTCGGTCTGTCTTTGAAAA

Ace file of the UniGene biog3_v1.0_unigene23569

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62008	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Tetratricopeptide repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T1U9_RICCO	-	-	68%
FL-Next	tr=Tetratricopeptide repeat protein, putative; Ricinus communis (Castor bean).	-	-	80%
Blast2go	tetratricopeptide repeat protein 5-like	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T1U9

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 79 - 385

Fln protein: MYSIPSEMRKQPTRRAVYEYMRGKVLDVFPEYCKEAEDHLSKAVKLDPSLADAWLCLGNCFWKKGDLNGAKNCFGLSLK

Protein Length: 80

Fln nts: AATGTATTCAATACCTTCGGAAATGAGAAAACAGCCCACACGCCGAGCTGTGTATGAATATATGAGAGGGAAAGTGCTGGATGTTTTCCCGGAATATTGTAAAGAAGCAGAAGACCACTTATCAAAAGCCGTTAAACTGGATCCTTCTCTGGCGGATGCCTGGCTATGCTTAGGCAATTGCTTCTGGAAGAAGGGTGATTTGAATGGAGCGAAGAACTGCTTCGGTCTGTCTTTGAAAA

Fln Alignment:

biogeco3_mira_c22840___SIPSEMRKQPTRRAVYEYMRGKVLDVFPEYCKEAEDHLSKAVKLDPSLADAWLCLGNCFWKKGDLNGAKNCFGLSL
B9T1U9__________________SIPLEQRKTPVQRAKYEYLRGKILDVFPEYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLPSAKNCFSLAL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain