SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23546

Length: 450 nt

UniGene Fasta

>biog3_v1.0_unigene23546
TCATTCACGTTTCCAGTGTTGTGGAATGGTACAATTCATTATCAGCTCCATTAAGTCATATACTTCAAATTTTAGCAGAAATTTTGTATGAATGTAGTTGTAAGAGGCAGTGTGGCCTTGTGGGTATTGGGATAATGTGGTGCAGGATTGTGGCCATGTCATTGGTTTGGCAGTATGGAGATAAACCAAGATGCCAAGCTTGGAAAGGACTCTCCTGGGGTATGGTACCTCTCCTTGGAGGAGCATTGTGTGCATGTACATGGCATTTCTTCTATAATGCTGAATCACTCGAGATTCTGGTGGCGATACAAGCTGCATTGACTCTGGTTGGTAATTTTACTATGTTAGTGGCTGCCTTTCGCATTTATGATTCAACTACAGGAGGATCTGAGACTTCTTGAATGACTATATTTACCCTGAAATCACTTATATTTTTGTATCCTTTCATAC

Ace file of the UniGene biog3_v1.0_unigene23546

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2571	2/3
SustainPine v2.0	sp_v2.0_unigene70192	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF2499 domain containing protein	-	-	2.0e-40	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	uncharacterized protein	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	77%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYP9

Fln msg: your sequence is shorter than subject: 133 - 216

Fln protein: IHVSSVVEWYNSLSAPLSHILQILAEILYECSCKRQCGLVGIGIMWCRIVAMSLVWQYGDKPRCQAWKGLSWGMVPLLGGALCACTWHFFYNAESLEILVAIQAALTLVGNFTMLVAAFRIYDSTTGGSETS*

Protein Length: 134

Fln nts: TCATTCACGTTTCCAGTGTTGTGGAATGGTACAATTCATTATCAGCTCCATTAAGTCATATACTTCAAATTTTAGCAGAAATTTTGTATGAATGTAGTTGTAAGAGGCAGTGTGGCCTTGTGGGTATTGGGATAATGTGGTGCAGGATTGTGGCCATGTCATTGGTTTGGCAGTATGGAGATAAACCAAGATGCCAAGCTTGGAAAGGACTCTCCTGGGGTATGGTACCTCTCCTTGGAGGAGCATTGTGTGCATGTACATGGCATTTCTTCTATAATGCTGAATCACTCGAGATTCTGGTGGCGATACAAGCTGCATTGACTCTGGTTGGTAATTTTACTATGTTAGTGGCTGCCTTTCGCATTTATGATTCAACTACAGGAGGATCTGAGACTTCTTGA___ATGACTATATTTACCCTGAAATCACTTATATTTTTGTATCCTTTCATAC

Fln Alignment:

biogeco3_mira_c22807___IVAMSLVWQYGDKPRCQAWKGLSWGMVPLLGGALCACTWHFFYNAESLEILVAIQAALTLVGNFTMLVAAFRIYD
A9NYP9__________________MVAMALVWQYGDKPGCQAWKGLSWGMVPLFGGALCACTWHFFYNAESLEILVAMQAALTLVGNFTMLVAAFRIYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain