SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23541

Length: 300 nt

UniGene Fasta

>biog3_v1.0_unigene23541
AATGTATCATGAATTCCTTTGTCGAACTGATATTTTTGAGAAAGTTGCAGTGTAGTCTTCGAAGCTTACTCGCTACGGCAAGAGGGATACGCTTTCCTCCAGGGAGGTGCAGACTGCTGTTAAGCTTGTTCTTCCGGGCGAGCTCGCTAAGCATGCCGTCTCTGAGGGCACGAAGGCTGTTACCAAATTCACCTCTACCTGAGCCGAGTTCTTTTCCTCTGTAATTTTTTTGTCACGGTGTTCTACTTACGGTGTCTCTTGACACCACCTTTTCTTGCAGAATTTGGGCCCTTCTTCTCC

Ace file of the UniGene biog3_v1.0_unigene23541

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17542	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B n=2 Tax=Picea sitchensis RepID=A9NZJ5_PICSI	-	-	1.99965e-42	93%
FL-Next	sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	histone h2b	-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWP2

Fln msg: your sequence is shorter than subject: 67 - 162

Fln protein: MYHEFLCRTDIFEKVAV*SSKLTRYGKRDTLSSREVQTAVKLVLPGELAKHAVSEGTKAVTKFTST*

Protein Length: 68

Fln nts: AATGTATCATGAATTCCTTTGTCGAACTGATATTTTTGAGAAAGTTGCAGTGTAGTCTTCGAAGCTTACTCGCTACGGCAAGAGGGATACGCTTTCCTCCAGGGAGGTGCAGACTGCTGTTAAGCTTGTTCTTCCGGGCGAGCTCGCTAAGCATGCCGTCTCTGAGGGCACGAAGGCTGTTACCAAATTCACCTCTACCTGA___GCCGAGTTCTTTTCCTCTGTAATTTTTTTGTCACGGTGTTCTACTTACGGTGTCTCTTGACACCACCTTTTCTTGCAGAATTTGGGCCCTTCTTCTCC

Fln Alignment:

biogeco3_mira_c22801___DIFEKVAV*SSKLTRYGKRDTLSSREVQTAVKLVLPGELAKHAVSEGTKAVTKFTST
A9NWP2__________________DIFEKVAAESSKLTRYGKRDTLSSREVQTAVKLVLPGELAKHAVSEGTKAVTKFTST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain