SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23538

Length: 297 nt

UniGene Fasta

>biog3_v1.0_unigene23538
AATGTCTAAAGCTGTCTCAAATATATTCACTATTTCCTCTTGATAGAAACTCTCCTGAAATGGAGATGGCAGCCGAAAGTCTTAAAAGTCATTTAAAACTAGAGGAAAGGAAGGAGCTAGTAAAAATGTACACTGAAGCATGTGGTGCTCTGAACCAAACAGTGGCAGTTGAAGCCCTTGGCTTGATTTCGACATTGGAAGGAACGAACAAATAAATGTTCACATGATTATACATATAGTCAATATCGCATGCATACAAGTGTCAGACAAGCAAAGGTGGTTGTTCTCTGGTACATA

Ace file of the UniGene biog3_v1.0_unigene23538

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9360	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] dbj\|BAD94734.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC10234.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	2.00386e-43	38%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	45%
Blast2go	protein	-	-	0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate transport	GO:0008643	Biological Process	58%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	58%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	58%
Blast2go	integral to membrane	GO:0016021	Cellular Component	58%
Blast2go	plastid	GO:0009536	Cellular Component	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9FK44

Fln msg: your sequence is shorter than subject: 71 - 381

Fln protein: CLKLSQIYSLFPLDRNSPEMEMAAESLKSHLKLEERKELVKMYTEACGALNQTVAVEALGLISTLEGTNK*

Protein Length: 72

Fln nts: AATGTCTAAAGCTGTCTCAAATATATTCACTATTTCCTCTTGATAGAAACTCTCCTGAAATGGAGATGGCAGCCGAAAGTCTTAAAAGTCATTTAAAACTAGAGGAAAGGAAGGAGCTAGTAAAAATGTACACTGAAGCATGTGGTGCTCTGAACCAAACAGTGGCAGTTGAAGCCCTTGGCTTGATTTCGACATTGGAAGGAACGAACAAATAA___ATGTTCACATGATTATACATATAGTCAATATCGCATGCATACAAGTGTCAGACAAGCAAAGGTGGTTGTTCTCTGGTACATA

Fln Alignment:

biogeco3_mira_c22798___KLSQIYSLFPLDRNSPEMEMAAESLKSHLKLEERKELVKMYTEACGALNQTVAVEALGL
B9FK44__________________KICRIHNMFPPEENSAEMEMVAGGLKKNLQVAERVHLLSLYRSICTAGNIRTAAEALGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain