SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23493

Length: 241 nt

UniGene Fasta

>biog3_v1.0_unigene23493
AATGTAATCATGTAAGATAATCCAGGTTCAGATGTTGCCGCTGAATCAGCTGCAGCATTGGCTGCTGCATCTATTGTGTTCCAGAGTTCAGACCCAGGGTACTCCCAACTGCTTCTCAGAACTGCAATTCGGGTGTTTGGGTTCGCGGACAAATACAGGGGAGCATACAGTGATAGTCAGACCGTGAGAGCAGGAGTGTGCCCTTTCTACTGCGACTTTGATGGATACCAAGACGAACTGC

Ace file of the UniGene biog3_v1.0_unigene23493

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4215	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Endo-1,4-beta-glucanase n=1 Tax=Dimocarpus longan RepID=C7EC60_9ROSI	-	-	64%
FL-Next	tr=Endo-beta-1,4-glucanase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	70%
Blast2go	endoglucanase 17-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulase.	EC:3.2.1.4	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	80%
Blast2go	cellulase activity	GO:0008810	Molecular Function	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	NADH:ubiquinone oxidoreductase, B12 subunit	IPR012576	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O64401

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 252 aas, your sequence is shorter than subject: 80 - 510

Fln protein: NVIM*DNPGSDVAAESAAALAAASIVFQSSDPGYSQLLLRTAIRVFGFADKYRGAYSDSQTVRAGVCPFYCDFDGYQDEL

Protein Length: 81

Fln nts: AATGTAATCATGTAAGATAATCCAGGTTCAGATGTTGCCGCTGAATCAGCTGCAGCATTGGCTGCTGCATCTATTGTGTTCCAGAGTTCAGACCCAGGGTACTCCCAACTGCTTCTCAGAACTGCAATTCGGGTGTTTGGGTTCGCGGACAAATACAGGGGAGCATACAGTGATAGTCAGACCGTGAGAGCAGGAGTGTGCCCTTTCTACTGCGACTTTGATGGATACCAAGACGAACTGC

Fln Alignment:

biogeco3_mira_c22726___NPGSDVXXXXXXXXXXXXIVFQSSDPGYSQLLLRTAIRVFGFADKYRGAYSDSQTVRAGVCPFYCDFDGYQDEL
O64401__________________HPGSDVAAETAAALAAASLVFRKSDPQYSKRLIHTAMRVFDFADKHRGAYSDS--LRSCVCPFYCSYSGYEDEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain