SustainPineDB

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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23485

Length: 387 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23485
GAATTCATAGCAGGAACCAATCAACTAGACATAAAACAGAGCTATGGCTTACAGTGCCATGGCAGCTAGCTGCCATTGCCTGCATTTCATGAACACTGCTTCTCAGGAATGCATTTGAAGAGAGCTTCCATCAAACCAAGACGTTTTCCTGGACTTTCAAGCTCGTTGTGGGGTTCAAATGGCTTCCAAGCCCATTTGAAGAGGGGTTATCGGCATATAGAGATCTGGTATCATCATCCAGATGCTCAAACACGAATGCCCAGTTGGCTAATTTGTCTGGACAAGTCAAGGAAAAGGCCACTGAATTTGATTTCAAGGAGTACATGCGTTCCAAGGCAATTTCAGTGAATGAGGCACTGGATAGGGCTGTCCCACTTCGTTATCCTG

Ace file of the UniGene biog3_v1.0_unigene23485 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18733	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Isoprenyl diphosphate synthase n=2 Tax=Picea RepID=D2IT07_PICAB	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	geranylgeranyl diphosphate synthase	-	-	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT16

Fln msg: Overlapping hits, possible frame ERROR between 112 and 112, and overlapping frame ERROR between 219 and 207, Distance to subject end: 268 aas, your sequence is shorter than subject: 115 - 383

Fln protein: MAYSAMAASCHCLHFMNTASQExxLKRASIKPRRFPGLSSSLWGSNGFQAHLKxxxxxxxDLVSSSRCSNTNAQLANLSGQVKEKATEFDFKEYMRSKAISVNEALDRAVPLRYP

Protein Length: 116

Fln nts: GAATTCATAGCAGGAACCAATCAACTAGACATAAAACAGAGCTATGGCTTACAGTGCCATGGCAGCTAGCTGCCATTGCCTGCATTTCATGAACACTGCTTCTCAGGAAxxxxxxTTGAAGAGAGCTTCCATCAAACCAAGACGTTTTCCTGGACTTTCAAGCTCGTTGTGGGGTTCAAATGGCTTCCAAGCCCATTTGAAGAGxxxxxxxxxxxxxxxxxxAGATCTGGTATCATCATCCAGATGCTCAAACACGAATGCCCAGTTGGCTAATTTGTCTGGACAAGTCAAGGAAAAGGCCACTGAATTTGATTTCAAGGAGTACATGCGTTCCAAGGCAATTTCAGTGAATGAGGCACTGGATAGGGCTGTCCCACTTCGTTATCCTG

Fln Alignment:

biogeco3_mira_c22717___MAYSAMAASCHCLHFMNTASQECHLKRASIKPRRFPGLSSSLWGSNGFQAHLKR-xxxxxxxVSSSRCSNTNAQLANLSGQVKEKATEFDFKEYMRSKAISVNEALDRAVPLRYP
C0PT16__________________MAYSSMAPSCHCLHFMNIVSQECNLKRVSIQSRRFRGLSTSLWSSGGFQGHLKRExxxxxxxVSSLRCSNTNAQLANLSEQVKEKVTEFDFKEYMRSKAMSVNEALDRAVPLRYP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain