SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23472

Length: 179 nt

UniGene Fasta

>biog3_v1.0_unigene23472
TTAGCACATTATGCAAAAATACCCAGATGCAAAAGTCATAAGTCTTGGAATTGGAGATACAACTGAACCTATTCCAGAAGTCATAACTTCAGCAATGGCACAGCGTGCACAAGCTTTATCAACAAGAGAGGGTTATAGTGGATATGGAGCAGAACAAGGGGAAAAGGTTCTTAGGACTG

Ace file of the UniGene biog3_v1.0_unigene23472

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18809	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	LL-diaminopimelate aminotransferase, chloroplastic n=3 Tax=Brassicaceae RepID=DAPAT_ARATH	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ll-diaminopimelate aminotransferase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	LL-diaminopimelate aminotransferase.	EC:2.6.1.83	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Lysine biosynthesis	00300	87%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	lysine biosynthetic process via diaminopimelate	GO:0009089	Biological Process	87%
Blast2go	systemic acquired resistance, salicylic acid mediated signaling pathway	GO:0009862	Biological Process	87%
Blast2go	L,L-diaminopimelate aminotransferase activity	GO:0010285	Molecular Function	87%
Blast2go	copper ion binding	GO:0005507	Molecular Function	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPM3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 321 aas, your sequence is shorter than subject: 59 - 471

Fln protein: *HIMQKYPDAKVISLGIGDTTEPIPEVITSAMAQRAQALSTREGYSGYGAEQGEKVLRT

Protein Length: 60

Fln nts: TTAGCACATTATGCAAAAATACCCAGATGCAAAAGTCATAAGTCTTGGAATTGGAGATACAACTGAACCTATTCCAGAAGTCATAACTTCAGCAATGGCACAGCGTGCACAAGCTTTATCAACAAGAGAGGGTTATAGTGGATATGGAGCAGAACAAGGGGAAAAGGTTCTTAGGACTG

Fln Alignment:

biogeco3_mira_c22700___MQKYPDAKVISLGIGDTTEPIPEVITSAMAQRAQALSTREGYSGYGAEQGEKVLR
B8LPM3__________________MQKYPDANVISLGIGDTTEPIPEVITSAMAQRAQALSTIEGYSGYGAEQGEKVLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain