SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23433

Length: 394 nt

UniGene Fasta

>biog3_v1.0_unigene23433
AATGTCTAAATTTTGTGAATAAGCTAAATCTTCCCATTTTCACTGGGAGCAGAGTAGAAGGGGATCGAAATTGCCCTATTCAAATAGTGCTGTTAGATGCCTCTACAGGGGAATCGATCACAACAGGACCTGAGTCTTCCCAGAAAGTAGAAATTGTTGTTCTTGAGGGTGACTTTGGACCTGATGACAAAGAAGATTGGACTGCAGAAGAATTCAGTAATCATGTGGTTCAAGAGAGGGAGGGTAAACGGCCACTTCTTACTGGTGATCTGCTAATTGCTTTGAAAAATGGCATTGGAACCCTTGGAGAATTAACCTTTACTGATAATTCCAGCTGGGTAAGGAGCCGTAAATTCAGGCTTGGGGCCAGAGTTGCAGGGCAGAGTTACGATGG

Ace file of the UniGene biog3_v1.0_unigene23433

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33908	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-binding protein [Arabidopsis thaliana] dbj\|BAB08793.1\| calmodulin-binding protein [Arabidopsis thaliana] gb\|AAL07138.1\| putative calmodulin-binding protein [Arabidopsis thaliana] gb\|AAM14373.1\| putative calmodulin-binding protein [Arabidopsis t	-	-	66%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	63%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	calmodulin binding	GO:0005516	Molecular Function	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	Calmodulin binding protein-like	IPR012416	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H226

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 130 - 277

Fln protein: CLNFVNKLNLPIFTGSRVEGDRNCPIQIVLLDASTGESITTGPESSQKVEIVVLEGDFGPDDKEDWTAEEFSNHVVQEREGKRPLLTGDLLIALKNGIGTLGELTFTDNSSWVRSRKFRLGARVAGQSYD

Protein Length: 131

Fln nts: AATGTCTAAATTTTGTGAATAAGCTAAATCTTCCCATTTTCACTGGGAGCAGAGTAGAAGGGGATCGAAATTGCCCTATTCAAATAGTGCTGTTAGATGCCTCTACAGGGGAATCGATCACAACAGGACCTGAGTCTTCCCAGAAAGTAGAAATTGTTGTTCTTGAGGGTGACTTTGGACCTGATGACAAAGAAGATTGGACTGCAGAAGAATTCAGTAATCATGTGGTTCAAGAGAGGGAGGGTAAACGGCCACTTCTTACTGGTGATCTGCTAATTGCTTTGAAAAATGGCATTGGAACCCTTGGAGAATTAACCTTTACTGATAATTCCAGCTGGGTAAGGAGCCGTAAATTCAGGCTTGGGGCCAGAGTTGCAGGGCAGAGTTACGATGG

Fln Alignment:

biogeco3_mira_c22635___LNFVNKLNLPIFTGSRVEGDRNCPIQIVLLDASTGESITTGPESSQKVEIVVLEGDFGPDDKEDWTAEEFSNHVVQEREGKRPLLTGDLLIALKNGIGTLGELTFTDNSSWVRSRKFRLGARVA
B9H226__________________LHFRSRLSLPLFTAGKVEGEQGAAIHIVLIDGNTGRVVTSGPESSVKLDVIVLEGDFNNEDDDNWTREEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLMVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain