SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23424

Length: 244 nt

UniGene Fasta

>biog3_v1.0_unigene23424
AATGTTGTAATGGTACTGGAGCAAAGCTTGGCTCAAGGCCAAAGACATGCTTAGCTTGTGGAGGCAGGGGTCAAGTGATGCGAACACAAGAGACACCTTTTGGCTTGTTTTCACAGGTGTCAATCTGTTCAGAGTGCGGAGGAGAAGGTGAAGTCATATCAGACTATTGCCGGAAATGTACTGGTGAAGGGCGCATTCGTGTGAAAAAGGATCTCAAAGTTAAAGTTCCTCCAGGAGTGAATAG

Ace file of the UniGene biog3_v1.0_unigene23424

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59424	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DnaJ homologue n=1 Tax=Pisum sativum RepID=P92424_PEA	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	molecular chaperone hsp40 -like protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1 complex, gamma subunit	IPR000131	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Chaperone DnaJ	IPR012724	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9P9

Fln msg: Distance to subject end: 194 aas, your sequence is shorter than subject: 80 - 508

Fln protein: CCNGTGAKLGSRPKTCLACGGRGQVMRTQETPFGLFSQVSICSECGGEGEVISDYCRKCTGEGRIRVKKDLKVKVPPGVN

Protein Length: 81

Fln nts: AATGTTGTAATGGTACTGGAGCAAAGCTTGGCTCAAGGCCAAAGACATGCTTAGCTTGTGGAGGCAGGGGTCAAGTGATGCGAACACAAGAGACACCTTTTGGCTTGTTTTCACAGGTGTCAATCTGTTCAGAGTGCGGAGGAGAAGGTGAAGTCATATCAGACTATTGCCGGAAATGTACTGGTGAAGGGCGCATTCGTGTGAAAAAGGATCTCAAAGTTAAAGTTCCTCCAGGAGTGAATAG

Fln Alignment:

biogeco3_mira_c22624___CNGTGAKLGSRPKTCLACGGRGQVMRTQETPFGLFSQVSICSECGGEGEVISDYCRKCTGEGRIRVKKDLKVKVPPGVN
D5A9P9__________________CNGTGAKFGSRPKTCSTCGGRGQVMRTQETPFGLFSQVSICSECGGEGEVISDYCRTCAGEGRIRVKKDLKVKVPPGVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain