SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23407

Length: 1620 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene23407

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20792	1/74
SustainPine v2.0	sp_v2.0_unigene27326	5/74
SustainPine v2.0	sp_v2.0_unigene47820	68/74

Source	Descriptions	Term	Type	Identity
AutoFact	Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein phosphatase 2c	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	87%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	87%
Blast2go	interspecies interaction between organisms	GO:0044419	Biological Process	87%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg:

Fln protein: MSYLSSIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG*

Protein Length: 283

Fln nts: CAGAGTACaCGGGGAGAGTAGAATAGCAGAGTTTCATGAATAAGAGTCAGAACTTGCCGGCAATTTTCGGTTTTATGGATGCAATAACGAGTTTATCCCTTTCTTCAACCTGCGATTGCCATTTTGAGGTTTTCGCCGATCAATTTGCTTCCTGATGTTAGTGGTTTCGCTTCGTTTCTCAAATAATACGATTTATGTCGGTTTGACGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCTAAAAATCAGATTGGAAGTATTCAGAAACGATAAACTGCAAATTCAAGGCACTGATCTTGTGTATGGACTTCAGTACCATGCGTGGAACTTCATCCAGGTTTAAGCATATAATGAAATTGGGACTTGAAGATTTCAACTAAAATATTGCTATCTTCACTCTGGCTCATCAGCTGTTGTTACAAGGAAACACAAATTACGGCATTGCATAAAAGTTGAAACGGTCTATGACATGCCACAAGGTTCCCATCTCATAAAAGGATC_-_ATGAGTTATCTTAGTTCTATATTTTCTTCTAGGGATCCACAATGCATCAGCATCCCTGCCAGTGGTGGAGGTGTCAGTCAGAATCAGAAGTTCAGCTATGGATTTGCAAGCTCACCAGGGAAAAGATCTTCAATGGAAGACTTTTTTGAGACACAGATTTGTGAGGTTGATGGTCAAATGGTTGGCTTGTTTGGAGTCTTTGATGGTCATGGTGGTGCTCGAGCTGCAGAATACGTGAAACAGAAACTTTTTGCAAATTTGATAAGCCACCCAAAATTTATTAGTGATACAAAGCTGGCAATAGCTGATGCTTACAAACAAACAGACAAGGAATTTCTCAATACAGAAAATAGTCAACACAGAGATGCTGGGTCAACTGCATCAACTGCAGTTCTTGTAGGGGATCGATTGCTGGTTGCAAACGTTGGGGATTCGAGAGCTGTTATATGCAGGGCTGGAAAAGCTGTTGCTCTTTCTCGGGATCATAAACCAAATCAAACTGACGAGCGTCAACGAATTGAGGATGCTGGAGGATTTGTTATGTGGGCTGGTACATGGCGTGTTGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTAGCTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGCAAAAAAGCTTACAGAGGAAGCATATAAAAAAGGCAGTGCAGATAATATTACTTGTGTTGTAGTGCGATTTAACCATGGTTAA___CAGAGGCAATTAAAATTTTAACTGATGCAAAATCCACATTGCAAGAGCCTTGTATGCTACCAACCTTTTGTTGCTTGAAGTTTGTTGAAGGTGGCCTAGTTTCTTCATATTTGGTTAGATTGCATGCAAATTATGCGATATAATTCTACCTATTACAGTTATAATGCCAGTTGAATAGGTCAAGGTAAGTTGCACACGGTCTGCTGTTTAGATAAAAAAGGGCATGCTTGTCATAATATGTGAAAATTTTTCATACATT

Fln Alignment:

biogeco3_mira_c22598___MSYLSSIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG
A9NWY3__________________MSYLSSIFSSRDPQCVSIPVSGGGVSQNQKFSYGYASSPGKRSSMEDFFDTQICEVDGQIVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYRKGSADNITCVVVRFSHG

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
26	25		75		0.996473
27		75		25	0.996473
28	75		25		0.996473
29			75	25	0.996473
150	20	80			0.995493
151	20			80	0.995493
153		80	20		0.995493
154		80		20	0.995493
212		20	80		0.995493
214	20		80		0.995493
215	20	80			0.995493
216		80	20		0.995493
218	20		80		0.995493
221		20		80	0.995493
222		20	80		0.995493
237	25		75		0.996473
241		75		25	0.996473
278	20			80	0.995493
280	20		20		0.99255
281		80		20	0.995493
283			80	20	0.995493
284	80			20	0.995493
416	20	60		20	0.99255
417	80		20		0.995493
419		80	20		0.995493
430	16	83			0.994512
432			83	16	0.994512
433		83	16		0.994512
451	90			10	0.90298
528		10	90		0.90298
551	10	90			0.90298
552	10			90	0.90298
726	10			90	0.90298
727		10	90		0.90298
730			90	10	0.90298
768		11	77	11	0.968132
769	88			11	0.923564
770	87			12	0.992554
771	87			12	0.992554
845	87			12	0.992554
846		87	12		0.992554
847	87			12	0.992554
1057		11	88		0.923564
1059			87	12	0.992554
1060			87	12	0.992554
1077	11		77	11	0.968132
1078	11		88		0.923564
1080	77		11		0.968132
1081		88		11	0.923564
1286	11			88	0.991528
1288	88		11		0.991528
1289			88	11	0.991528
1352	20		80		0.995493
1353		20		80	0.995493
1355			80	20	0.995493
1484	12			87	0.992554
1509		14		85	0.993533
1512			85	14	0.993533
1584		25	75		0.996473
1585	25			75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain