SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23403

Length: 365 nt

UniGene Fasta

>biog3_v1.0_unigene23403
AATGTCTTCCTGCAACCAAAGCTTGAAGGGCTGGCCAGGAAAAAGGGCATTACATTTGTTGCAATAGACAGGAACAGGCCTCTAGATGAGCAGGGGCCTTTTGATATTGTTTTGCATAAGCTGTCAGGGAGGGACTGGCGACAAAATCTGGAGGAATATAGGACTTCCCACCCGGAAGTTATTGTCCTTGATCCCCCAGATGCCATACAACATTTATATAATCGCCAGTCAATGCTTCAAGATGTTGCTGATTTAGACCTGTGTCATTGTGAAGGTACAGTTGGTGTTCCAAAGCAACTGGTTATAACTGGGGACCCTGCTTCCATTCCCAATGCCGTTGCTAAAGCGGGGCTAAAGCTGCCACT

Ace file of the UniGene biog3_v1.0_unigene23403

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21314	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	inositol phosphate kinase [Glycine max]	-	-	63%
FL-Next	sp=Inositol-tetrakisphosphate 1-kinase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	inositol phosphate kinase	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	81%
Blast2go	catalytic activity	GO:0003824	Molecular Function	81%
Blast2go	cytoplasm	GO:0005737	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase, plant	IPR017427	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase	IPR008656	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SUG3

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 121 - 353

Fln protein: NVFLQPKLEGLARKKGITFVAIDRNRPLDEQGPFDIVLHKLSGRDWRQNLEEYRTSHPEVIVLDPPDAIQHLYNRQSMLQDVADLDLCHCEGTVGVPKQLVITGDPASIPNAVAKAGLKLP

Protein Length: 122

Fln nts: AATGTCTTCCTGCAACCAAAGCTTGAAGGGCTGGCCAGGAAAAAGGGCATTACATTTGTTGCAATAGACAGGAACAGGCCTCTAGATGAGCAGGGGCCTTTTGATATTGTTTTGCATAAGCTGTCAGGGAGGGACTGGCGACAAAATCTGGAGGAATATAGGACTTCCCACCCGGAAGTTATTGTCCTTGATCCCCCAGATGCCATACAACATTTATATAATCGCCAGTCAATGCTTCAAGATGTTGCTGATTTAGACCTGTGTCATTGTGAAGGTACAGTTGGTGTTCCAAAGCAACTGGTTATAACTGGGGACCCTGCTTCCATTCCCAATGCCGTTGCTAAAGCGGGGCTAAAGCTGCCACT

Fln Alignment:

biogeco3_mira_c22591___FLQPKLEGLARKKGITFVAIDRNRPLDEQGPFDIVLHKLSGRDWRQNLEEYRTSHPEVIVLDPPDAIQHLYNRQSMLQDVADLDLCHCEGTVGVPKQLVITGDPASIPNAVAKAGLKLP
Q9SUG3__________________FLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEWRRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDASSIPEAVNNAGLRLP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain