SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23401

Length: 314 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23401
AATGTATCCTTTCTTTGAGTCATACAGAAATTATTTGCAAATAGACATCGTAGCTGCAGATCAAGATGATTTGAGGACGTGGAAAGGATGGGTTGAGTCACGATTAAGGCAACTTACTTTGAAGATTGAACGAGACACATTTGGGATGCTGCAGTGTCATCCTTACCCTTGTGAATATAGCAACACATCTAGTCAAGGATATCATTGTGCATATTTTATGGGTTTACAAAGGAAACAAGGAGTGCCAATACAGGAAGGTCAACAGTTTGACATACGTGGCACTGTAGACGAATTCAGGCACTCAGTGATACATT

Ace file of the UniGene biog3_v1.0_unigene23401 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28358	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Os06g0558700 protein n=5 Tax=Oryza sativa RepID=C7J4C8_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	nuclear poly polymerase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein of unknown function DUF599	IPR006747	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ25

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 104 - 701

Fln protein: MYPFFESYRNYLQIDIVAADQDDLRTWKGWVESRLRQLTLKIERDTFGMLQCHPYPCEYSNTSSQGYHCAYFMGLQRKQGVPIQEGQQFDIRGTVDEFRHSVIH

Protein Length: 105

Fln nts: AATGTATCCTTTCTTTGAGTCATACAGAAATTATTTGCAAATAGACATCGTAGCTGCAGATCAAGATGATTTGAGGACGTGGAAAGGATGGGTTGAGTCACGATTAAGGCAACTTACTTTGAAGATTGAACGAGACACATTTGGGATGCTGCAGTGTCATCCTTACCCTTGTGAATATAGCAACACATCTAGTCAAGGATATCATTGTGCATATTTTATGGGTTTACAAAGGAAACAAGGAGTGCCAATACAGGAAGGTCAACAGTTTGACATACGTGGCACTGTAGACGAATTCAGGCACTCAGTGATACATT

Fln Alignment:

biogeco3_mira_c22586___YPFFESYRNYLQIDIVAADQDDLRTWKGWVESRLRQLTLKIERDTFGMLQCHPYPCEYSNTSSQGYHCAYFMGLQRKQGVPIQEGQQFDIRGTVDEFRHSV
C0PQ25__________________YPFFEAYKNYLQVDIVAADQDDLRLWKGWVESRLRQLTLKIERDTFGMLQCHPYPTEYVDNSKQCPHCAFFMGLQRKQGVLIQEGQQFDIRGTVDEFRQSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain