SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23390

Length: 313 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23390
GAAGAATGCCTTAGGGAATGCACAGGCTAAGAGCCATTCTTGTTGAGCAGACAGAAGATTTCCCTCGGCAGACTAGATCATTGAAGTTGATATATCATGACGATATCAGGCTTGCACAAATACCAGCAAATTGCAGACTTGCCCAATTGAGGGAGATAGTCAGAGAGAGGTACCCAAGTTCCAGAGCAGTTCTCATCAAATACAAAGATTTGGAGGGTGATCTCGTGACCATTACAAGCACAGAGGAGCTTAGATTGGCTCAAAGATGTGTGAGCCCGGATGAGTCTTTGAGATTGTATGTGGTAGAGGTAGA

Ace file of the UniGene biog3_v1.0_unigene23390 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30747	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PB1 domain containing protein	-	-	8.0e-13	30%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	heat shock protein 70 -interacting	-	-	7.52454e-28	69%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HCH6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 380 aas, your sequence is shorter than subject: 103 - 678

Fln protein: RMP*GMHRLRAILVEQTEDFPRQTRSLKLIYHDDIRLAQIPANCRLAQLREIVRERYPSSRAVLIKYKDLEGDLVTITSTEELRLAQRCVSPDESLRLYVVEV

Protein Length: 104

Fln nts: GAAGAATGCCTTAGGGAATGCACAGGCTAAGAGCCATTCTTGTTGAGCAGACAGAAGATTTCCCTCGGCAGACTAGATCATTGAAGTTGATATATCATGACGATATCAGGCTTGCACAAATACCAGCAAATTGCAGACTTGCCCAATTGAGGGAGATAGTCAGAGAGAGGTACCCAAGTTCCAGAGCAGTTCTCATCAAATACAAAGATTTGGAGGGTGATCTCGTGACCATTACAAGCACAGAGGAGCTTAGATTGGCTCAAAGATGTGTGAGCCCGGATGAGTCTTTGAGATTGTATGTGGTAGAGGTAGA

Fln Alignment:

biogeco3_mira_c22567___EDFPRQTRSLKLIYHDDIRLAQIPANCRLAQLREIVRERYPSSRAVLIKYKDLEGDLVTITSTEELRLAQRCVSPDESLRLYVVEV
F6HCH6__________________EEEPKKT--VKLVFGEDIRRAQLPVNCSLSELREVIRDRFPSSRAVLIKYRDQEGDLVTITTNEELKLAEASVGTQGSIRLYVVEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain