SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23376

Length: 248 nt

UniGene Fasta

>biog3_v1.0_unigene23376
AAATTCGAAATGTCAATTCGAAGTTTTGTATGGAGATGGCACTCAAGTGAACGGTGCACTTGCTTCGGATGCGATCACCCTCGGCTCTGAAAATGTTCCAAATTTCGCATTCGGTTGTGCGGAGTCCCTAAGGGAAGATACATATTCCTCACCGGGACTGATGGGATTAGGGGGCGGATCGCTTTCATTGTTGAATCAGCCATCCACAACCGAATTGTTTGGCGGGACGTTTTCTTACTGTCTACATT

Ace file of the UniGene biog3_v1.0_unigene23376

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11360	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease-like protein [Arabidopsis thaliana] gb\|AAB60729.1\| F21M12.13 gene product [Arabidopsis thaliana] gb\|AAM65914.1\| nucleoid DNA-binding-like protein [Arabidopsis thaliana] gb\|AAN86165.1\| unknown protein [Arabidopsis thaliana] gb\|AEE28488.1\|	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	aspartic proteinase nepenthesin-2 precursor	-	-	57%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	57%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	57%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	57%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	57%
Blast2go	apoplast	GO:0048046	Cellular Component	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSK0

Fln msg: Distance to subject end: 187 aas, your sequence is shorter than subject: 82 - 452

Fln protein: NSKCQFEVLYGDGTQVNGALASDAITLGSENVPNFAFGCAESLREDTYSSPGLMGLGGGSLSLLNQPSTTELFGGTFSYCLH

Protein Length: 83

Fln nts: AAATTCGAAATGTCAATTCGAAGTTTTGTATGGAGATGGCACTCAAGTGAACGGTGCACTTGCTTCGGATGCGATCACCCTCGGCTCTGAAAATGTTCCAAATTTCGCATTCGGTTGTGCGGAGTCCCTAAGGGAAGATACATATTCCTCACCGGGACTGATGGGATTAGGGGGCGGATCGCTTTCATTGTTGAATCAGCCATCCACAACCGAATTGTTTGGCGGGACGTTTTCTTACTGTCTACATT

Fln Alignment:

biogeco3_mira_c22544___NSKCQFEVLYGDGTQVNGALASDAITLGSENVPNFAFGCAESLREDTYXXXXXXXXXXXXXXXXNQPSTTELFGGTFSYCL
C0PSK0__________________NSKCQFEVLYGDGTQVDGTLASDAITLGSQYLPNFSFGCAESLSEDTYSSPGLMGLGGGSLSLLTQAPTAELFGGTFSYCL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain