SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23361

Length: 350 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23361
AATGTCTACAATTCAATGAAACAAGAAGGCTGAGAGAAGTGACATACCGGATATTGATAAAAAGAAATATTTAGTCCCAGCAGATTTGACTGTTGGGCAATTTGTTTATGTTGTCCGAAAGAGAATAAAACTTAGTCCCGAGAAGGCAATCTTCATATTTGTAAAGAATATTCTGCCTCCAACAGCTGCCATGATGTCAGCCATCTACGAGGAGCACAAGGACGATGATGGCTTTCTTTATATGACATACAGCGGGGAAAACACGTTTGGTATAGATATGACATACAATGGAGAAGACACATTTGATAACATGTAGAATGCTGTAGGGCATCTTCTGCTTGCACAGCTTG

Ace file of the UniGene biog3_v1.0_unigene23361 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8094	2/3
SustainPine v2.0	sp_v2.0_unigene16857	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	Autophagy-related protein 8d n=2 Tax=Arabidopsis thaliana RepID=ATG8D_ARATH	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	gaba receptor-associated	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	autophagy	GO:0006914	Biological Process	97%
Blast2go	receptor activity	GO:0004872	Molecular Function	97%
Blast2go	microtubule binding	GO:0008017	Molecular Function	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Autophagy protein Atg8 ubiquitin-like	IPR004241	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS23

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 105 - 129

Fln protein: MSTIQ*NKKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEEHKDDDGFLYMTYSGENTFGIDMTYNGEDTFDNM*

Protein Length: 106

Fln nts: AATGTCTACAATTCAATGAAACAAGAAGGCTGAGAGAAGTGACATACCGGATATTGATAAAAAGAAATATTTAGTCCCAGCAGATTTGACTGTTGGGCAATTTGTTTATGTTGTCCGAAAGAGAATAAAACTTAGTCCCGAGAAGGCAATCTTCATATTTGTAAAGAATATTCTGCCTCCAACAGCTGCCATGATGTCAGCCATCTACGAGGAGCACAAGGACGATGATGGCTTTCTTTATATGACATACAGCGGGGAAAACACGTTTGGTATAGATATGACATACAATGGAGAAGACACATTTGATAACATGTAG___AATGCTGTAGGGCATCTTCTGCTTGCACAGCTTG

Fln Alignment:

biogeco3_mira_c22522___KKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEEHKDDDGFLYMTYSGENTFG
A9NS23__________________EKAEKSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVNNVLPPTAALMSSVYEEHKDEDGFLYFTYSGENTFG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
151		66		33	0.997452
171	33		66		0.997452
172		33	66		0.997452
174			66	33	0.997452
175			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain