SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23239

Length: 340 nt

UniGene Fasta

>biog3_v1.0_unigene23239
CACTTTTGGACAACCCACTCAGCAGAATATAATGGTTACTACACCACAACCTGTAACAAATCCATTTGGAACTCTTCCTGCAATGCCTCAGATGTCTATTGGACGAAGTGGGGGATCTTCTCCTTCTGTCAGTATGGGATATCTAGTTTGCCTGTTAATGAAAACCTGTTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTAACTCAAAGGTCAAGGATCCGCATGCATTCGCGTAGATACAATCCTAAGAAGGATAGTCCCAAGGTATCGTTTTTCAGTGATAGTGAAGAAGCGCCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAG

Ace file of the UniGene biog3_v1.0_unigene23239

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22601	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoporin 98 n=1 Tax=Daucus carota RepID=A9ZP15_DAUCA	-	-	45%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	69%
Blast2go	nucleoporin autopeptidase	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	60%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	-
Sma3	Peptidase S59, nucleoporin	IPR007230	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TF37

Fln msg: Overlapping hits, possible frame ERROR between 139 and 130, and overlapping frame ERROR between 162 and 162, Distance to subject end: 51 aas, your sequence is shorter than subject: 113 - 1048

Fln protein: TFGQPTQQNIMVTTPQPVTNPFGTLPAMPQMSIGRSGGSSPSxxxxxSSLPVxxxPVQVRTTSLLTPRHVTQRSRIRMHSRRYNPKKDSPKVSFFSDSEEAPSTPKADAMFIP

Protein Length: 114

Fln nts: CACTTTTGGACAACCCACTCAGCAGAATATAATGGTTACTACACCACAACCTGTAACAAATCCATTTGGAACTCTTCCTGCAATGCCTCAGATGTCTATTGGACGAAGTGGGGGATCTTCTCCTTCTxxxxxxxxxxxxxxxTCTAGTTTGCCTGTTAAxxxxxxACCTGTTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTAACTCAAAGGTCAAGGATCCGCATGCATTCGCGTAGATACAATCCTAAGAAGGATAGTCCCAAGGTATCGTTTTTCAGTGATAGTGAAGAAGCGCCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAG

Fln Alignment:

biogeco3_mira_c22324___QNIMVTTPQPVTNPFGTLPAMPQMSIGRSGGSSPSVxxxISSLPVNEKPVQVRTTSLLTPRHVTQRSRIRMHSRRYNPKKDSPK--------------------------------VSFFSDSEEAPSTPKADAMFIP
A9TF37__________________QNVISATASPVTNPFGTLPAMPQITIGRSAGSGPSVxxxISSMPVAEKPTQVRVNTLLTPRHITQRSKVRMHARRYHPKKDSPKVIAKGDSHVSTSWSLMCYVRRRLILRLQVKWEVSFFSDGDEAPSTPKADVMFVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain