SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23227

Length: 243 nt

UniGene Fasta

>biog3_v1.0_unigene23227
CCGTGGATCCACCTGGGCTGGATGCGGTGGACTTGACCGCTCTTCTGCTGATCACATTGGGATGCTGGCAACTGTTATGAATGCTATATTTTTACAAGCAACTATGGAAAGCATTGGTATTGCAACTCGTGTTCAAACTGCATTTCGGATGTCAGAAGTTGCTGAACCTTATATATTCAGAAGAGCAATCAGGCATTTAGAGAAAGGGAGAGTCGTGATCTTTGCTGCTGGAACTGGTAACCC

Ace file of the UniGene biog3_v1.0_unigene23227

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3997	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	uridylate kinase [Arabidopsis thaliana] dbj\|BAB01794.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK92763.1\| putative uridylate kinase [Arabidopsis thaliana] gb\|AAM14100.1\| putative uridylate kinase [Arabidopsis thaliana] gb\|AEE76131.1\| uridylate	-	-	84%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	92%
Blast2go	uridylate kinase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	UMP kinase.	EC:2.7.4.22	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	91%
Blast2go	Metabolic pathways	01100		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	cellular amino acid biosynthetic process	GO:0008652	Biological Process	91%
Blast2go	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	91%
Blast2go	phosphorylation	GO:0016310	Biological Process	91%
Blast2go	mRNA processing	GO:0006397	Biological Process	91%
Blast2go	RNA binding	GO:0003723	Molecular Function	91%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	91%
Blast2go	UMP kinase activity	GO:0033862	Molecular Function	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	0.0	-
Sma3	Uridylate kinase, bacteria	IPR015963	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MZA1

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 80 - 250

Fln protein: RGSTWAGCGGLDRSSADHIGMLATVMNAIFLQATMESIGIATRVQTAFRMSEVAEPYIFRRAIRHLEKGRVVIFAAGTGN

Protein Length: 81

Fln nts: CCGTGGATCCACCTGGGCTGGATGCGGTGGACTTGACCGCTCTTCTGCTGATCACATTGGGATGCTGGCAACTGTTATGAATGCTATATTTTTACAAGCAACTATGGAAAGCATTGGTATTGCAACTCGTGTTCAAACTGCATTTCGGATGTCAGAAGTTGCTGAACCTTATATATTCAGAAGAGCAATCAGGCATTTAGAGAAAGGGAGAGTCGTGATCTTTGCTGCTGGAACTGGTAACCC

Fln Alignment:

biogeco3_mira_c22309___RGSTWAGCGGLDRSSADHIGMLATVMNAIFLQATMESIGIATRVQTAFRMSEVAEPYIFRRAIRHLEKGRVVIFAAGTGN
B9MZA1__________________RGSSWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain