SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23163

Length: 223 nt

UniGene Fasta

>biog3_v1.0_unigene23163
AATGTCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGCAGGAGAGCTTATGATTCTGCCATTGAAGCATACATGGGGACCTTCGATCAATCAAAACAACCTGAAGAGGTTGCTTTACAAGAAGCACACGAGTCAGCATTACATAAGGCTTTAGCTGTTTTTAACAGCAGTGCGGTGGGTAGCTGGTGCCGCAAGACAGAAGTATGAGAAGATGGTTCAAAG

Ace file of the UniGene biog3_v1.0_unigene23163

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2110	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Interferon-induced guanylate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB86_RICCO	-	-	54%
FL-Next	tr=Similarity to guanylate binding protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	immune response	GO:0006955	Biological Process	74%
Blast2go	GTPase activity	GO:0003924	Molecular Function	74%
Blast2go	GTP binding	GO:0005525	Molecular Function	74%
Blast2go	nucleolus	GO:0005730	Cellular Component	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Guanylate-binding protein, C-terminal	IPR003191	-	-
Sma3	Guanylate-binding protein, N-terminal	IPR015894	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9FNL5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 667 aas, your sequence is shorter than subject: 69 - 1060

Fln protein: MSTSWQSVEEAECRRAYDSAIEAYMGTFDQSKQPEEVALQEAHESALHKALAVFNSSAVGSWCRKTEV*

Protein Length: 70

Fln nts: AATGTCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGCAGGAGAGCTTATGATTCTGCCATTGAAGCATACATGGGGACCTTCGATCAATCAAAACAACCTGAAGAGGTTGCTTTACAAGAAGCACACGAGTCAGCATTACATAAGGCTTTAGCTGTTTTTAACAGCAGTGCGGTGGGTAGCTGGTGCCGCAAGACAGAAGTATGAGAAGATGGTTCAAAG

Fln Alignment:

biogeco3_mira_c22209___MSTSWQSVEEAECRRAYDSAIEAYMGTFDQSKQPEEVALQEAHESALHKALAVFNSSAVGS
Q9FNL5__________________ITSSWQSVEETECRRAYDSGVEAYMAAFDQSKAPEEGALREEHEEAVRKALAIFNSNAVGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain