SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23109

Length: 370 nt

UniGene Fasta

>biog3_v1.0_unigene23109
AATGTTGTCTGCTTTTCATTTGTAATAGGCGTTCCTCCAAAATGCCTGGGAATCCTCCATTTTCCCAGCCGGATTCTGCAGAAGACCATGAAGAAGATGAGGAGGAGGAGGAAGAAATCAAAGACGAGAAAGTGCGGGAAGCAAAGGGGCAAATAAAGCAAGTGCAGAAGCTGGTCAAGCGTTTATCGGGCGAGCAAGTGCAGATACGCGTCCATGACGTGAAGATCAAAGGGAATACAAGAACGAAGGATTCGGTGATAGAAGCGGAGGTGGAAGAAGTGAAGAATGCAAAGACAATGCAGGAACTAGTGCAGGCCGCTGCCAAGGCCAATGCGCGTCTCCAGAGCTTGGGGATAGTTCGAGTCAGCCA

Ace file of the UniGene biog3_v1.0_unigene23109

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8047	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	outer membrane OMP85 family protein [Arabidopsis thaliana] dbj\|BAB11541.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24283.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM13245.1\| unknown protein [Arabidopsis thaliana] gb\|AED90883.1\| outer memb	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	59%
Blast2go	outer membrane omp85 family protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	outer membrane	GO:0019867	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bacterial surface antigen (D15)	IPR000184	-	0.0	-
Sma3	Surface antigen variable number	IPR010827	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HC92

Fln msg: Distance to subject end: 397 aas, atg_distance in limit (1-15): atg_distance = 15, your sequence is shorter than subject: 109 - 534

Fln protein: MPGNPPFSQPDSAEDHEEDEEEEEEIKDEKVREAKGQIKQVQKLVKRLSGEQVQIRVHDVKIKGNTRTKDSVIEAEVEEVKNAKTMQELVQAAAKANARLQSLGIVRVS

Protein Length: 110

Fln nts: AATGTTGTCTGCTTTTCATTTGTAATAGGCGTTCCTCCAAA_-_ATGCCTGGGAATCCTCCATTTTCCCAGCCGGATTCTGCAGAAGACCATGAAGAAGATGAGGAGGAGGAGGAAGAAATCAAAGACGAGAAAGTGCGGGAAGCAAAGGGGCAAATAAAGCAAGTGCAGAAGCTGGTCAAGCGTTTATCGGGCGAGCAAGTGCAGATACGCGTCCATGACGTGAAGATCAAAGGGAATACAAGAACGAAGGATTCGGTGATAGAAGCGGAGGTGGAAGAAGTGAAGAATGCAAAGACAATGCAGGAACTAGTGCAGGCCGCTGCCAAGGCCAATGCGCGTCTCCAGAGCTTGGGGATAGTTCGAGTCAGCCA

Fln Alignment:

biogeco3_mira_c22131___QVQKLVKRLSGEQVQIRVHDVKIKGNTRTKDSVIEAEVEEVKNAKTMQELVQAAAKANARLQSLGI
F6HC92__________________KLESMFRRLASEKVKLRVHDVLIKGNTKTKDSLIEAELEAIKNATTMQELLKAAGIANHRFHSFGI

SSRs (tot: 1)

Start position	End position	Sequence	Length
99	112	GAG GAG GAG GAG GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain