SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23074

Length: 1860 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene23074 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16469	125/125

Source	Descriptions	Term	Type	Identity
AutoFact	Pseudotzain n=3 Tax=Pinaceae RepID=Q40922_PSEMZ	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cysteine proteinase rd21a-like	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC2

Fln msg:

Fln protein: MGILLLFALLALFAIAGSASRADFSIIGYDSKDLREDDAISELYELWLAQHRKAYNGLDEKQKRFSVFKDNFLYIHQHNNQENPSFKLGLNQFADLSHEEFKATYLGAKLDTKKRLSKSPSPRYQYSEGENLPESVDWREKGAVAAVKDQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELVDCDTSYNQGCNGGLMDYAFQFIIDNGGLDSEDDYPYTANAGSCDAYRKNAHVVTIDSYEDVPENDEKSLKKAAAHQPISVAIEASGRAFQFYESGVFTSTCGTQLDHGVTLVGYGSESGKDYWIVKNSWGKSWGEKGFIRLQRNIEGASTGMCGIAMEASYPVKKGSNPPNPGPSPPSPVKPPTVCDNYYSCPESNTCCCMYDFGGYCYAWGCCPLNSATCCDDHYSCCPSDHPVCDLDAQTCLKSRKDPFGTKMLKRTPAKPYWALSGQKAVTERS*

Protein Length: 464

Fln nts: GTGATCTGGGCAGACAGGAACGCCATCCTTTTCATTTTGAGGGTGACTGCTTTGCTTGGTCCATCCATGTGGCTTTGAATCTTTTGAGAGACTGGTTTGGTTTTCAGCGAGGGTTACGCCCAGACCGGTGGAGAGAAATTCCCTATTCGTGCCCAAATCAGTCAAAAACTAAGATTGTATCAGT_-_ATGGGAATCCTTCTGCTGTTTGCTCTGCTGGCATTGTTTGCCATCGCAGGCAGCGCTTCCAGAGCAGATTTTTCCATCATCGGGTATGATAGCAAAGACCTGAGGGAAGATGATGCGATCTCGGAGCTCTATGAACTGTGGCTCGCTCAGCACAGGAAAGCCTATAATGGCCTTGACGAGAAACAGAAGAGGTTCTCTGTATTTAAAGACAATTTTCTGTATATTCATCAGCACAACAACCAAGAGAATCCATCCTTCAAACTGGGGCTGAACCAGTTTGCAGATCTAAGTCACGAGGAATTCAAGGCCACATATTTGGGTGCCAAGCTGGATACCAAGAAACGCTTGTCCAAGTCTCCCAGCCCTCGATACCAGTATTCGGAGGGCGAGAATTTGCCAGAGTCCGTTGACTGGAGAGAAAAGGGAGCCGTGGCTGCTGTTAAGGACCAGGGCTCCTGCGGAAGTTGTTGGGCGTTCTCGACTGTGGCTGCTGTTGAAGGCATCAATCAAATTGTGACTGGCAATTTGACTTCCCTGTCCGAGCAGGAACTGGTGGACTGCGATACTTCTTACAACCAAGGATGCAATGGCGGTCTCATGGATTATGCTTTCCAGTTTATCATAGACAACGGTGGGCTTGACAGTGAGGATGATTACCCTTACACGGCCAACGCTGGCAGCTGTGACGCTTACCGAAAAAATGCCCATGTGGTGACAATTGATAGCTATGAAGATGTGCCTGAGAACGATGAGAAGTCGCTGAAGAAGGCTGCGGCGCATCAGCCGATTAGCGTTGCCATCGAAGCCAGCGGAAGGGCGTTCCAGTTTTACGAATCTGGCGTATTCACAAGCACCTGCGGAACTCAGCTGGACCACGGTGTCACTCTGGTAGGGTATGGTTCAGAGTCCGGCAAAGATTATTGGATTGTGAAGAATTCTTGGGGAAAGAGCTGGGGAGAGAAGGGTTTCATCAGACTGCAGAGGAACATTGAAGGGGCTTCGACGGGAATGTGCGGTATAGCGATGGAGGCATCGTACCCTGTAAAGAAGGGTTCCAACCCTCCAAACCCTGGGCCTTCTCCCCCATCCCCTGTGAAGCCTCCTACCGTGTGTGATAACTACTATTCCTGCCCGGAGAGCAACACCTGCTGTTGCATGTATGACTTTGGGGGTTACTGCTATGCATGGGGTTGCTGCCCTCTCAACTCTGCCACATGCTGCGACGATCACTACAGTTGCTGCCCTAGCGATCATCCGGTTTGCGATCTCGATGCACAGACATGCCTCAAGAGTCGCAAGGATCCATTTGGAACGAAGATGCTGAAGCGTACCCCGGCCAAACCTTACTGGGCTCTCTCTGGTCAGAAAGCGGTCACTGAAAGGAGCTGA___TTTCTCCCTTCAATCCCAGCCCTCTAAACTCAACAACAGGCTGGTCCGAATGGGGGAAGAAATTAAATTTTAATGCATGAAAAAATTTCAAACATATTTATCGATAAATATTCCTGCACATATGGCTTCTCCAAATCGGCCAAGACACTTCCCATCTCTGTTCTCTCGTCAATTCCATTTCTATTTCTATTTGTGTATGTACAGATCTTTCTATGGACGACCATTATCAAAGCTGAAGCCTGTATCAGCGCAAAACGGCTTTATTACAGAACAGCTTTGTGATTCTC

Fln Alignment:

biogeco3_mira_c22063___RADFSIIGYDSKDLREDDAISELYELWLAQHRKAYNGLDEKQKRFSVFKDNFLYIHQHNNQENPSFKLGLNQFADLSHEEFKATYLGAKLDTKKRLSKSPSPRYQYSEGENLPESVDWREKGAVAAVKDQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELVDCDTSYNQGCNGGLMDYAFQFIIDNGGLDSEDDYPYTANAGSCDAYRKNAHVVTIDSYEDVPENDEKSLKKAAAHQPISVAIEASGRAFQFYESGVFTSTCGTQLDHGVTLVGYGSESGKDYWIVKNSWGKSWGEKGFIRLQRNIEGASTGMCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPTVCDNYYSCPESNTCCCMYDFGGYCYAWGCCPLNSATCCDDHYSCCPSDHPVCDLDAQTCLKSRKDPFGTKMLKRTPAKPYWALSGQKAVTERS
A9NUC2__________________RADFSIIGYDSKDLREDDAIMELYELWLAQHKKAYNGLGEKQNRFSVFKDNFLYIHQHNNQGNPSYKLGLNQFADLSHEEFKATYLGAKLDTKKRLSNSPSPRYQYSDGEDLPESIDWREKGAVTAVKDQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELVDCDTSYNQGCNGGLMDYAFQFIINNGGLDSEDDYPYKANDGSCDAYRKNAHVVTIDDYEDVPENDEKSLKKAAANQPISVAIEASGRAFQFYESGVFTSTCGTQLDHGVTLVGYGSESGTDYWIVKNSWGKSWGEKGFIRLQRNIEGVSTGMCGIAMEASYPLKKGANPPNPGPSPPSPVKPPTVCDNYYSCPESNTCCCMYDFGGYCYAWGCCPLNSATCCDDHYSCCPNDHPVCDLDAQTCLKSRKDPIGTKMLKRTPAKPYWALSGQEAVTERT

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
93	25	75			0.996473
96	75		25		0.996473
97		75		25	0.996473
201	66			33	0.997452
302		16	83		0.994512
303	16	83			0.994512
305		83		16	0.994512
490			85	14	0.999981
599	14		85		0.993533
600		14	85		0.993533
604			83	16	0.994512
609		20	80		0.995493
611	80			20	0.995493
612			80	20	0.995493
625	16		83		0.994512
627	16		83		0.994512
628		16	83		0.994512
629	16		83		0.994512
654		20	80		0.995493
657			80	20	0.995493
716	20		80		0.995493
721	80			20	0.995493
1044	75		25		0.996473
1087	83			16	0.994512
1090		83		16	0.994512
1097	14	85			0.993533
1181	12	87			0.992554
1183		87	12		0.992554
1184	87			12	0.992554
1482			85	14	0.999981
1483	78			14	0.999974
1492	10			90	0.90298
1508	12	87			0.992554
1700	10	90			0.90298
1702			90	10	0.90298
1703	88			11	0.923564
1729			90	10	0.90298
1731			90	10	0.90298
1793			88	11	0.923564
1821	16		66	16	0.988813
1822		20	80		0.995493
1825			80	20	0.995493
1865	25		75		0.996473
1867	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain