SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23032

Length: 428 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23032
GCGAATGCAGATTATCTCACTGCGATACAGGTCCCATTGAACATGCTGTGAAGCATGTGTTGGACGATCTGCGAGCTATTGCGAAAGGAGACTATGAAGTGGTTGCAACTGAGAAACGTAAGCTTGGGACAATTGTTTTTGCTGCAGTTTGTTTGGTCCCAGATGAAACTAAAGCATTGCTTGACAAGATATCTGATCTTGATTCGCGTGCTAAGATGTTTCTTGAGGAAAAAAATGTTAAAAGCTCTCTTAAGAGTACCCATGTGACACTTGCTCACAAGAGGTCTCATGGGGTCACTGCCGTTGCTAGTTTTGGTGTTTTCCGTGGACAGCAAGTCCCTGTTGAATTCACTGCAATCCTGTTTTCAGATAAGCTTGCTGCGCTGGAAGCTCATTTGGGTTGCATTGGAGATGAAAAGATATACATT

Ace file of the UniGene biog3_v1.0_unigene23032 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30270	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	WS0274.B21_I24 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS0274_I24 5, mRNA sequence.	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	54%
Blast2go	translation elongation factor ef-1 alpha	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	2',3'-cyclic-nucleotide 3'-phosphodiesterase.	EC:3.1.4.37	-	0.0	69%
Blast2go	RNA ligase (ATP).	EC:6.5.1.3	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	tRNA splicing, via endonucleolytic cleavage and ligation	GO:0006388	Biological Process	69%
Blast2go	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity	GO:0004113	Molecular Function	69%
Blast2go	RNA ligase (ATP) activity	GO:0003972	Molecular Function	69%
Blast2go	polynucleotide 5'-hydroxyl-kinase activity	GO:0051731	Molecular Function	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AJT9

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 142 - 302

Fln protein: ECRLSHCDTGPIEHAVKHVLDDLRAIAKGDYEVVATEKRKLGTIVFAAVCLVPDETKALLDKISDLDSRAKMFLEEKNVKSSLKSTHVTLAHKRSHGVTAVASFGVFRGQQVPVEFTAILFSDKLAALEAHLGCIGDEKIYI

Protein Length: 143

Fln nts: GCGAATGCAGATTATCTCACTGCGATACAGGTCCCATTGAACATGCTGTGAAGCATGTGTTGGACGATCTGCGAGCTATTGCGAAAGGAGACTATGAAGTGGTTGCAACTGAGAAACGTAAGCTTGGGACAATTGTTTTTGCTGCAGTTTGTTTGGTCCCAGATGAAACTAAAGCATTGCTTGACAAGATATCTGATCTTGATTCGCGTGCTAAGATGTTTCTTGAGGAAAAAAATGTTAAAAGCTCTCTTAAGAGTACCCATGTGACACTTGCTCACAAGAGGTCTCATGGGGTCACTGCCGTTGCTAGTTTTGGTGTTTTCCGTGGACAGCAAGTCCCTGTTGAATTCACTGCAATCCTGTTTTCAGATAAGCTTGCTGCGCTGGAAGCTCATTTGGGTTGCATTGGAGATGAAAAGATATACATT

Fln Alignment:

biogeco3_mira_c21995___PIEHAVKHVLDDLRAIAKGDYEVVATEKRKLGTIVFAAVCLVPDETKALLDKISDLDSRAKMFLEEKNVKSSLKSTHVTLAHKRSHGVTAVASFGVFRGQQVPVEFTAILFSDKLAALEAHLGCIGDEKI
A5AJT9__________________PFESSVRQVLEQLKSIAKGDYPTPGTEKRKFGTIVFAAVSLPVTEIQSLLANLAEKNPKVEAFFKDKHLENSLRNAHVTLAHKRSHGVTAVANYGLFLNRQVPVDFTALLFSDKMAALEAYPGSVDGERI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain