SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23006

Length: 281 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23006
ATCGAATTTGTCTCTGGATCGGCCGGTCAAAACATTGATTCTATTACAAGATTTTTATAAAACTACCCTGAAGGCCCTTGAAGAGGCAAAAAATGAGAGGCTTTGGTTCAAGACAAATCTCAAGCTTTGCAAGCTCTGGTTTAATAGAGGAGACTACGGGCGAATGAACAAGACAGTGAAGGAGCTTCACCGATCTTGTCAGAGAGAGGATGGAACAGATGACCATAAAAAGGGCACCCAGCTGTTGGAGGTGTATGCAATTGAGATCCAGATGTACACTG

Ace file of the UniGene biog3_v1.0_unigene23006 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7713	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative COP9 signalosome complex subunit 2 [Oryza sativa Japonica Group]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	92%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	PCI/PINT associated module	IPR013143	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ67

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 93 - 439

Fln protein: SNLSLDRPVKTLILLQDFYKTTLKALEEAKNERLWFKTNLKLCKLWFNRGDYGRMNKTVKELHRSCQREDGTDDHKKGTQLLEVYAIEIQMYT

Protein Length: 94

Fln nts: ATCGAATTTGTCTCTGGATCGGCCGGTCAAAACATTGATTCTATTACAAGATTTTTATAAAACTACCCTGAAGGCCCTTGAAGAGGCAAAAAATGAGAGGCTTTGGTTCAAGACAAATCTCAAGCTTTGCAAGCTCTGGTTTAATAGAGGAGACTACGGGCGAATGAACAAGACAGTGAAGGAGCTTCACCGATCTTGTCAGAGAGAGGATGGAACAGATGACCATAAAAAGGGCACCCAGCTGTTGGAGGTGTATGCAATTGAGATCCAGATGTACACTG

Fln Alignment:

biogeco3_mira_c21955___LLQDFYKTTLKALEEAKNERLWFKTNLKLCKLWFNRGDYGRMNKTVKELHRSCQREDGTDDHKKGTQLLEVYAIEIQMYT
B8LQ67__________________LLQEFYQTTLKALEEAKNERLWFKTNLKLCKIFFDMGEYGRMNKILKELHKSCRREDGSDDQKKGTQLLEVYAIEIQMYT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain