SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22996

Length: 310 nt

UniGene Fasta

>biog3_v1.0_unigene22996
GATAATGCGATATGGGTTTCAGTCTCATCTTCCTGTCGCGAATGCCGTAGTATGTATGTATGCAAAATGCGGTTGCATAAAGAAGGCACGTGAAGTGTTTGACGAAACGCCTCAACGAAATGTTGTGTCTTGGACGACCATGATTGTAGCATACGCCATGCATTGCTTTGGCAGGGAAGCCCTTGTACTCTTTGAGGAGATGATAGAAGATGGCATGATGCCAGACAATATCACGTTCGTCGGTGTTCTGACTGCTTGTAGCCGTGCAGGTCTGGTGAATGAAGGCTATGGGTATTTCAATCAGATGATT

Ace file of the UniGene biog3_v1.0_unigene22996

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene66926	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LW63.1\|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj\|BAB02277.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76753.1\| pentatric	-	-	2.0e-34	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	pentatricopeptide repeat-containing	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3		IPR003612	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 74 aas, your sequence is shorter than subject: 103 - 232

Fln protein: IMRYGFQSHLPVANAVVCMYAKCGCIKKAREVFDETPQRNVVSWTTMIVAYAMHCFGREALVLFEEMIEDGMMPDNITFVGVLTACSRAGLVNEGYGYFNQMI

Protein Length: 104

Fln nts: GATAATGCGATATGGGTTTCAGTCTCATCTTCCTGTCGCGAATGCCGTAGTATGTATGTATGCAAAATGCGGTTGCATAAAGAAGGCACGTGAAGTGTTTGACGAAACGCCTCAACGAAATGTTGTGTCTTGGACGACCATGATTGTAGCATACGCCATGCATTGCTTTGGCAGGGAAGCCCTTGTACTCTTTGAGGAGATGATAGAAGATGGCATGATGCCAGACAATATCACGTTCGTCGGTGTTCTGACTGCTTGTAGCCGTGCAGGTCTGGTGAATGAAGGCTATGGGTATTTCAATCAGATGATT

Fln Alignment:

biogeco3_mira_c21940___IMRYGFQSHLPVANAVVCMYAKCGCIKKAREVFDETPQRNVVSWTTMIVAYAMHCFGREALVLFEEMIEDGMMPDNITFVGVLTACSRAGLVNEGYGYFNQM
D5AB53__________________IIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSM

SSRs (tot: 1)

Start position	End position	Sequence	Length
50	62	GTAT GTAT GTAT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain