SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22929

Length: 975 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene22929

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15507	40/41
SustainPine v2.0	sp_v2.0_unigene15913	1/41

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll a-b binding protein type 2 member 1A, chloroplastic n=37 Tax=Spermatophyta RepID=CB2A_PINSY	-	-	98%
FL-Next	sp=Chlorophyll a-b binding protein type 2 member 1A, chloroplastic; Pinus sylvestris (Scots pine).	-	-	98%
Blast2go	chlorophyll a b-binding protein	-	-	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: P15193

Fln msg: atg_distance in limit (1-15): atg_distance = 6,

Fln protein: MCCGIGSRCAFAGAQLSSMKPQNNQLLGVGGAHGEARVTMRKATGRKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK*

Protein Length: 275

Fln nts: A_-_ATGTGCTGCGGCATAGGGTCGCGGTGTGCGTTCGCTGGGGCGCAGCTATCATCGATGAAGCCTCAGAACAACCAGTTGCTGGGGGTCGGCGGAGCTCATGGCGAAGCGCGAGTGACGATGCGGAAAGCGACCGGCAGGAAGTCTGTTGCGGCGAGCAGCGATTCGCCATGGTACGGACCAGACCGTGTGCTGTATTTGGGTCCATTCTCCGGCGAGCCGCCGTCATACCTGACCGGTGAATTCCCCGGTGACTACGGGTGGGACACGGCGGGGCTGTCGGCGGATCCGGAGACGTTCGCGAAGAACAGAGAGCTGGAAGTGATCCACTGCCGGTGGGCGATGCTGGGTGCTCTAGGGTGCGTATTCCCGGAGCTTCTTGCGAGGAACGGTGTAAAGTTCGGTGAGGCGGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGAGGGCTTGACTACCTAGGGAGCCCACAGTTGATCCACGCCCAGAGCATTCTTGCCATCTGGGCATGCCAGGTCATCCTCATGGGTGCCATCGAGGGCTACCGTGTTGCAGGTGGCCCCCTCGGAGAGGTGACCGACCCCATCTATCCCGGCGGTAACTTCGACCCGCTGGGACTGGCAGACGACCCGGATGCTTTCGCGGAGCTGAAAGTGAAGGAGATCAAGAACGGACGGTTGGCCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCGATTGTGACGGGCAAAGGACCCATTGAGAACCTCGCCGATCACCTGGCCGACCCCGTGAACAACAATGCCTGGGCCTACGCCACCAACTTCGTCCCCGGTAAATAG___AAGATTAACACAACCTCAACTAGCAGCACAGAGCCCCATACGGCTTTGCCTTGCCCGGATGGGCTCTCGTGTATTCCCTTTTTCTTCTTATCCGCTTCCTTCCTTCCTTGACTACGTTGTAAATCTAATTGTATTTCTTTGCAACTTCATCT

Fln Alignment:

biogeco3_mira_c21844___CGIGSRCAFAGAQLSSMKPQNNQLLGVGGAHGEARVTMRKATGRKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK
P15193__________________CGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
818	20	80			0.995493
819	20	80			0.995493
820		80		20	0.995493
822		16	83		0.994512
823	16		66	16	0.98883
825	83			16	0.994512
845	20	80			0.995493
847		80		20	0.995493
859	20	80			0.995493
860	80			20	0.995493
908	20	80			0.995493
910	20			60	0.99255
966	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
918	932	CTTC CTTC CTTC CTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain