SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22910

Length: 381 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22910
TTCGCATGCAATTGCACAGGGATCCAAATGTGCTCTTTGCTGGCTACAAATTGCCACATCCATTGCAGTACAAGATTCTTCTCAGGATCCAAACTACAAGCCAGTCTTCTCCAATGCAGGCTTATAACTTGGCAATTGATGATCTTGATAAAGAGCTCGATCATTTGAAAAAGCTTTCGAGGATGAATTGGTACGTCTTCAATCAGAAAACCGAGATGGTTTATAGAAAACAATTCCTCTGACTGAAGAATGTCTTGAACAAGTTGTGCTATGGACTAGGATAAATTTTAATACACTATAATAGATTTCTGTCTGATCTGAAATATATGCTTTTATCACTGGAGTTTTGAGAAGAATATTTTTAGTGTTGTTAAATACATT

Ace file of the UniGene biog3_v1.0_unigene22910 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17063	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase II subunit J n=4 Tax=Poaceae RepID=B4FJS1_MAIZE	-	-	1.99993e-41	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	protein	-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	90%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	90%
Blast2go		GO:0080137	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase, dimerisation	IPR011261	-	0.0	-
Sma3	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	IPR008193	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN58

Fln msg: your sequence is shorter than subject: 80 - 120

Fln protein: RMQLHRDPNVLFAGYKLPHPLQYKILLRIQTTSQSSPMQAYNLAIDDLDKELDHLKKLSRMNWYVFNQKTEMVYRKQFL*

Protein Length: 81

Fln nts: TTCGCATGCAATTGCACAGGGATCCAAATGTGCTCTTTGCTGGCTACAAATTGCCACATCCATTGCAGTACAAGATTCTTCTCAGGATCCAAACTACAAGCCAGTCTTCTCCAATGCAGGCTTATAACTTGGCAATTGATGATCTTGATAAAGAGCTCGATCATTTGAAAAAGCTTTCGAGGATGAATTGGTACGTCTTCAATCAGAAAACCGAGATGGTTTATAGAAAACAATTCCTCTGA___CTGAAGAATGTCTTGAACAAGTTGTGCTATGGACTAGGATAAATTTTAATACACTATAATAGATTTCTGTCTGATCTGAAATATATGCTTTTATCACTGGAGTTTTGAGAAGAATATTTTTAGTGTTGTTAAATACATT

Fln Alignment:

biogeco3_mira_c21816___RMQLHRDPNVLFAGYKLPHPLQYKILLRIQTTSQSSPMQAYNLAI
A9NN58__________________RMQLHRDPNVLFAGYKLPHPLQYKILLRIQTTSQSSPMQAYNLAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain