SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22901

Length: 300 nt

UniGene Fasta

>biog3_v1.0_unigene22901
AATGTACTGTTGTTCCAGGGTTTGATCGGACAGAGTTTGAGGCTAAATGTGTTTTCATAACCAGCAAGGATGGAACTCAGATACCAATGTTCATTGTATCCAAGAAAGACATTGCTCTTGATGGTTCTCATCCAGCTCTATTATATGGTTATGGGGGCTTTAACTTTAGCATCACTCCATACTTCAGTGTTGGTCGTATTGTCATTTCAAGACATCTGGGGGCAGTTTTTGCACTTGCAAATATTCGTGGTGGTGGTGAATATGGAGAAGAATGGCATAAAGCAGGCTCTCTTGCCAACC

Ace file of the UniGene biog3_v1.0_unigene22901

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18736	1/2
SustainPine v2.0	sp_v2.0_unigene28509	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Prolyl endopeptidase, putative n=1 Tax=Ricinus communis RepID=B9R8I0_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	74%
Blast2go	protein	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8QSZ1

Fln msg: Distance to subject end: 195 aas, your sequence is shorter than subject: 99 - 729

Fln protein: CTVVPGFDRTEFEAKCVFITSKDGTQIPMFIVSKKDIALDGSHPALLYGYGGFNFSITPYFSVGRIVISRHLGAVFALANIRGGGEYGEEWHKAGSLAN

Protein Length: 100

Fln nts: AATGTACTGTTGTTCCAGGGTTTGATCGGACAGAGTTTGAGGCTAAATGTGTTTTCATAACCAGCAAGGATGGAACTCAGATACCAATGTTCATTGTATCCAAGAAAGACATTGCTCTTGATGGTTCTCATCCAGCTCTATTATATGGTTATGGGGGCTTTAACTTTAGCATCACTCCATACTTCAGTGTTGGTCGTATTGTCATTTCAAGACATCTGGGGGCAGTTTTTGCACTTGCAAATATTCGTGGTGGTGGTGAATATGGAGAAGAATGGCATAAAGCAGGCTCTCTTGCCAACC

Fln Alignment:

biogeco3_mira_c21801___TVVPGFDRTEFEAKCVFITSKDGTQIPMFIVSKKDIALDGSHPALLYGYGGFNFSITPYFSVGRIVISRHLGAVFALANIRGGGEYGEEWHKAGSLAN
D8QSZ1__________________TSVKGFDRTRFETKQVFVPSKDGTKVPMFIVARKSIALDGKHPALLYGYGGFNISITPYFSASRIVLIQHCGVIFAIANIRGGGEYGEEWHRAGSLGN

SSRs (tot: 1)

Start position	End position	Sequence	Length
247	258	GTG GTG GTG GTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain