SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22873

Length: 266 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22873
ATGTTGGAAAGTGGTACACATCTTCCAGCGATTTTGCAATCAATAGGTTGTATTGCCCAGAATGCAATGCCAGTTTTTGAAACACGGGAAGATGACGTGATTCAATTTCTCTGTGATAAACTTTTTCGACAGAATAGTAACACTGCTGATCTTCTAAGGACAGAATGGGAAGAAAGGAGTAAAGAATGTTTGTTGAAAATCTATGGTATTAAAACTCTTGTGAAAAGTTACTTGCCTAAAAAGGATGCCCATTTACGACAAAGGAT

Ace file of the UniGene biog3_v1.0_unigene22873 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14806	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Androgen induced inhibitor of proliferation (As3) / pds5, putative n=1 Tax=Ricinus communis RepID=B9T579_RICCO	-	-	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	58%
Blast2go	sister chromatid cohesion protein pds5	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HC27

Fln msg: Distance to subject end: 592 aas, your sequence is shorter than subject: 88 - 1411

Fln protein: MLESGTHLPAILQSIGCIAQNAMPVFETREDDVIQFLCDKLFRQNSNTADLLRTEWEERSKECLLKIYGIKTLVKSYLPKKDAHLRQR

Protein Length: 89

Fln nts: ATGTTGGAAAGTGGTACACATCTTCCAGCGATTTTGCAATCAATAGGTTGTATTGCCCAGAATGCAATGCCAGTTTTTGAAACACGGGAAGATGACGTGATTCAATTTCTCTGTGATAAACTTTTTCGACAGAATAGTAACACTGCTGATCTTCTAAGGACAGAATGGGAAGAAAGGAGTAAAGAATGTTTGTTGAAAATCTATGGTATTAAAACTCTTGTGAAAAGTTACTTGCCTAAAAAGGATGCCCATTTACGACAAAGGAT

Fln Alignment:

biogeco3_mira_c21759___MLESGTHLPAILQSIGCIAQNAMPVFETREDDVIQFLCDKLFRQNSNTADLLRTEWEERSKECLLKIYGIKTLVKSYLPKKDAHLRQ
B9HC27__________________MLEEKTHLPAVLQSLGCIAQTAMPVFETRENEIEEFIKSKILERSSKPEDNTKACWDDRSELCLLKVYGLKTLVKSYLPVKDVQLRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain