SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22856

Length: 243 nt

UniGene Fasta

>biog3_v1.0_unigene22856
AATGTAATGCTTCTACGTATTGGATTTTGTTTGAACTGATATGGAGAGATTATTTTAGATTGTATCAATCAAGTATGGCAACTCAATTTTCCATTTGGGGGGCCGAGAAGGATCAAGGAAATTCAGTGGAGCCAAGATCCAACACTATTTCAACTTTGGCGAGATGGACAAACAGGGTACCCTCTTATCGACGCTAATATGAAGGAATTGTCTGCCACTGGCTTTATGTCAAACAGAGGGCGT

Ace file of the UniGene biog3_v1.0_unigene22856

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene54991	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cryptochrome DASH, chloroplastic/mitochondrial n=4 Tax=Oryza sativa RepID=CRYD_ORYSJ	-	-	8.0e-25	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	cryptochrome dash	-	-	1.66879e-24	81%

Source	InterPros	Term	Type	Identity
Sma3	Cryptochrome/DNA photolyase, class 1	IPR002081	-	-
Sma3	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	-
Sma3	DNA photolyase, N-terminal	IPR006050	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Cryptochrome, DASH	IPR014133	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal	IPR018394	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKF0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 177 aas, your sequence is shorter than subject: 81 - 431

Fln protein: NVMLLRIGFCLN*YGEIILDCINQVWQLNFPFGGPRRIKEIQWSQDPTLFQLWRDGQTGYPLIDANMKELSATGFMSNRGR

Protein Length: 82

Fln nts: AATGTAATGCTTCTACGTATTGGATTTTGTTTGAACTGATATGGAGAGATTATTTTAGATTGTATCAATCAAGTATGGCAACTCAATTTTCCATTTGGGGGGCCGAGAAGGATCAAGGAAATTCAGTGGAGCCAAGATCCAACACTATTTCAACTTTGGCGAGATGGACAAACAGGGTACCCTCTTATCGACGCTAATATGAAGGAATTGTCTGCCACTGGCTTTATGTCAAACAGAGGGCGT

Fln Alignment:

biogeco3_mira_c21737___KEIQWSQDPTLFQLWRDGQTGYPLIDANMKELSATGFMSNRGR
B8LKF0__________________KQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGWMHHLAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain