SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22797

Length: 225 nt

UniGene Fasta

>biog3_v1.0_unigene22797
CGGGGATCAGCGCGTTGCCATGATGTGCCCACAATTTGTACTGTTCGGAGACTCCATCACTGAACAGTCGTTCAGGCCCGGTGGATGGGGATCAGCTCTTGCTGATTCCTACTCTCGCAAGGCTGATGTTGTTTTGCGGGGATACGGTGGCTACAATACACGATGGGCTCTGTTCCTTCTCGACAAGATCTTCCCCCTCTCTTCTAAGCCACCATTAGTGACATT

Ace file of the UniGene biog3_v1.0_unigene22797

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21493	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative esterase [Oryza sativa Japonica Group]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	gdsl esterase lipase at5g62930-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNG4

Fln msg: Distance to subject end: 184 aas, your sequence is shorter than subject: 68 - 256

Fln protein: MMCPQFVLFGDSITEQSFRPGGWGSALADSYSRKADVVLRGYGGYNTRWALFLLDKIFPLSSKPPLVT

Protein Length: 69

Fln nts: CGGGGATCAGCGCGTTGCC_-_ATGATGTGCCCACAATTTGTACTGTTCGGAGACTCCATCACTGAACAGTCGTTCAGGCCCGGTGGATGGGGATCAGCTCTTGCTGATTCCTACTCTCGCAAGGCTGATGTTGTTTTGCGGGGATACGGTGGCTACAATACACGATGGGCTCTGTTCCTTCTCGACAAGATCTTCCCCCTCTCTTCTAAGCCACCATTAGTGACATT

Fln Alignment:

biogeco3_mira_c21654___PQFVLFGDSITEQSFRPGGWGSALADSYSRKADVVLRGYGGYNTRWALFLLDKIFP
B8LNG4__________________PLFVLFGSSIVQYSFANGGWGAALADIYARKADILVRGYSAWNSRRALQVIDQIFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain