SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22793

Length: 225 nt

UniGene Fasta

>biog3_v1.0_unigene22793
TTCGTTTTGCTTGACACACGTGACCAGAGTTTCATAGCTGCTCGCGATGCTTTTGGAATCACTCCCCTCTATATCGGGTGGGGGCTTGATGGATCTGTTTGGTTTGCGTCGGAGATGAAAGCTTTGCATGTTGATTGTGAACGTTTTGAGTCTTTCCCCCGGGACATATATACTCCAGCAAACAAGGAGGCCTGCGCAGATGGTATAACCCAACTTGGTATTCAG

Ace file of the UniGene biog3_v1.0_unigene22793

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11151	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Asparagine synthetase n=3 Tax=Pinaceae RepID=E7EAQ2_PINPS	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	asparagine synthetase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Asparagine synthase (glutamine-hydrolyzing).	EC:6.3.5.4	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	91%
Blast2go	Nitrogen metabolism	00910	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	91%
Blast2go	asparagine biosynthetic process	GO:0006529	Biological Process	91%
Blast2go	response to absence of light	GO:0009646	Biological Process	91%
Blast2go	cellular response to sucrose starvation	GO:0043617	Biological Process	91%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	91%
Blast2go	response to fructose stimulus	GO:0009750	Biological Process	91%
Blast2go	cellular amino acid catabolic process	GO:0009063	Biological Process	91%
Blast2go	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Asparagine synthase, glutamine-hydrolyzing	IPR006426	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMV0

Fln msg: Overlapping hits, possible frame ERROR between 159 and 153, Distance to subject end: 394 aas, your sequence is shorter than subject: 75 - 591

Fln protein: FVLLDTRDQSFIAARDAFGITPLYIGWGLDGSVWFASEMKALHVDCERFExxxxGHIYSSKQGGLRRWYNPTWYS

Protein Length: 76

Fln nts: TTCGTTTTGCTTGACACACGTGACCAGAGTTTCATAGCTGCTCGCGATGCTTTTGGAATCACTCCCCTCTATATCGGGTGGGGGCTTGATGGATCTGTTTGGTTTGCGTCGGAGATGAAAGCTTTGCATGTTGATTGTGAACGTTTTGAGxxxxxxxxxxxxGGACATATATACTCCAGCAAACAAGGAGGCCTGCGCAGATGGTATAACCCAACTTGGTATTCAG

Fln Alignment:

biogeco3_mira_c21647___FVLLDTRDQSFIAARDAFGITPLYIGWGLDGSVWFASEMKALHVDCERFESxxPGHIYSSKQGGLRRWYNPTWYS
B8LMV0__________________FVLLDTRDQSFIAARDAFGITSLYIGWGLDGSVWFASEMKALHDDCERFESxxPGHIYSSKQGGLRRWYNPPWYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain