SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22731

Length: 367 nt

UniGene Fasta

>biog3_v1.0_unigene22731
AATGTACAGAAGTGATGATAGTGAGAAGGTATCTCTTGGACGTTCTGCTAGATATGAGAAGCGATGATTTTACTCTCACCGATATCAGGGGCTACTTAACTGACATATTTGGTGCTGGAACCGACACAACGACAACGACAATAGAGTGGGCAATGTAGAACTGATTCGCAACCCTGAGATAATGAAACGAGCTCAAAACGAATTGGACGATGTGGTTGGATGCAACCGGAAGGTGGAAGAAAGTGATACGGAGCGTCTCCCTTATCTGCGCGCCGTAGTGAAAGAAGTGTTTCGCTTTCACCCGACGGTGCCTCTTCTAGTCCCACACAAAGCAGATAGCCATTGTGAGGTTGGGGGATTCGTGATA

Ace file of the UniGene biog3_v1.0_unigene22731

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4620	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CYP76C2 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LCK6_ARALL	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	cytochrome p450	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	73%
Blast2go	heme binding	GO:0020037	Molecular Function	73%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	73%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	73%
Blast2go	oxygen binding	GO:0019825	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD9

Fln msg: Separated hits, possible frame ERROR between 155 and 158, Distance to subject end: 122 aas, your sequence is shorter than subject: 122 - 512

Fln protein: CTEVMIVRRYLLDVLLDMRSDDFTLTDIRGYLTDIFGAGTDTTTTTIEWAxxELIRNPEIMKRAQNELDDVVGCNRKVEESDTERLPYLRAVVKEVFRFHPTVPLLVPHKADSHCEVGGFVI

Protein Length: 123

Fln nts: AATGTACAGAAGTGATGATAGTGAGAAGGTATCTCTTGGACGTTCTGCTAGATATGAGAAGCGATGATTTTACTCTCACCGATATCAGGGGCTACTTAACTGACATATTTGGTGCTGGAACCGACACAACGACAACGACAATAGAGTGGGCAATxxxAGAACTGATTCGCAACCCTGAGATAATGAAACGAGCTCAAAACGAATTGGACGATGTGGTTGGATGCAACCGGAAGGTGGAAGAAAGTGATACGGAGCGTCTCCCTTATCTGCGCGCCGTAGTGAAAGAAGTGTTTCGCTTTCACCCGACGGTGCCTCTTCTAGTCCCACACAAAGCAGATAGCCATTGTGAGGTTGGGGGATTCGTGATA

Fln Alignment:

biogeco3_mira_c21568___RRYLLDVLLDMRSDDFTLTDIRGYLTDIFGAGXXXXXXXIEWAMxELIRNPEIMKRAQNELDDVVGCNRKVEESDTERLPYLRAVVKEVFRFHPTVPLLVPHKADSHCEVGGFVI
B8LPD9__________________KKDLLDVLLDMRSDEFTLTDIRGYLNDMFVAGSDTTAVTIEWAIxELVRNPEKLKRAQAELEEVIGLNRRLEESDTERLPYLRAVVKEVFRLHPAGPLLVPHRADGRFEIAGFVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain